Please note:
Historical discussions about the Bio-Formats library. Please look for and ask new questions at
https://forum.image.sc/tags/bio-formatsIf you are having trouble with image files, there is information about reporting bugs in the
Bio-Formats documentation. Please
send us the data and let us know what version of Bio-Formats you are using. For issues with your code, please provide a link to a public repository, ideally
GitHub.
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- import to Omero from Olympus CellR apl files
by twegier » Fri Jan 27, 2017 2:38 pm
- 5 Replies
- 2083 Views
- Last post by dgault
Thu Feb 02, 2017 1:14 pm
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- NDPI to TIF
by swvanderlaan » Mon Jan 30, 2017 11:56 am
- 3 Replies
- 2576 Views
- Last post by rleigh
Tue Jan 31, 2017 6:55 pm
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- Issue with Matlab parfor and Bioformats bfGetplane
by nhuebsch » Sat Jan 28, 2017 7:54 pm
- 5 Replies
- 2359 Views
- Last post by sbesson
Mon Jan 30, 2017 4:00 pm
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- .xml metadata and pixel dimensions
by GaetanoLombardi » Tue Jan 24, 2017 10:23 am
- 1 Replies
- 1299 Views
- Last post by sbesson
Wed Jan 25, 2017 11:01 am
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- Physical size = 1.0
by borja » Tue Jan 17, 2017 1:36 pm
- 3 Replies
- 1475 Views
- Last post by mtbc
Wed Jan 18, 2017 12:33 pm
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- Open OME-TIFF in CellProfiler?
by dps » Tue Jan 17, 2017 2:19 pm
- 1 Replies
- 1260 Views
- Last post by dps
Wed Jan 18, 2017 8:35 am
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- feature request: include version number in package filenames
by jdrogers » Wed Jan 04, 2017 4:56 pm
- 1 Replies
- 1241 Views
- Last post by sbesson
Thu Jan 05, 2017 12:39 pm
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- bfconvert: stitching differs between BF versions
by mattek » Tue Dec 13, 2016 10:19 pm
- 3 Replies
- 1778 Views
- Last post by sbesson
Mon Dec 19, 2016 12:06 pm
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- .nd2 -> .tif conversion issues
by user » Wed Dec 14, 2016 10:51 am
- 2 Replies
- 1754 Views
- Last post by user
Thu Dec 15, 2016 8:26 pm
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- possible bioformats bug
by bob.stephens » Wed Dec 14, 2016 12:07 pm
- 1 Replies
- 1359 Views
- Last post by bramalingam
Thu Dec 15, 2016 11:37 am
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- Hi-res bio-formats 2D images to DeepZoom (OpenSeadragon)
by darwinjob » Mon Dec 05, 2016 4:15 pm
- 2 Replies
- 1623 Views
- Last post by darwinjob
Tue Dec 13, 2016 4:08 pm
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- nd2 error - bfGetReader
by JeniaNovellus » Wed Dec 23, 2015 10:05 am
- 6 Replies
- 3496 Views
- Last post by sbesson
Wed Dec 07, 2016 11:01 pm
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- LSM files: differentiate between positions and tiles
by StefanoMas » Tue Dec 06, 2016 10:32 am
- 4 Replies
- 1850 Views
- Last post by StefanoMas
Wed Dec 07, 2016 8:48 am
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- Get TimeStamp for czi files
by nhuebsch » Mon Dec 05, 2016 6:51 pm
- 3 Replies
- 1931 Views
- Last post by sbesson
Mon Dec 05, 2016 8:50 pm
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- [Matlab] How to retrieve Tile and Position infor from .CZI?
by StefanoMas » Tue Sep 13, 2016 2:55 pm
- 6 Replies
- 2949 Views
- Last post by StefanoMas
Mon Dec 05, 2016 3:50 pm
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- Concatenate multi-channel nd2 files with bfconvert
by mattek » Wed Nov 16, 2016 10:44 pm
- 2 Replies
- 1886 Views
- Last post by mattek
Mon Nov 21, 2016 4:31 pm
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- nd2 RGB conversion channel mixing
by sjroyle » Tue Nov 01, 2016 1:47 pm
- 2 Replies
- 1371 Views
- Last post by bramalingam
Wed Nov 02, 2016 2:56 pm
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- multiple channels rgb file
by michaelgoelzer » Thu Oct 20, 2016 2:19 pm
- 1 Replies
- 1464 Views
- Last post by bramalingam
Fri Oct 21, 2016 4:26 pm
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- Open segmented*.AIM with Fiji or Bio-Formats for Matlab
by auzehong » Sat Mar 14, 2015 7:05 am
- 5 Replies
- 3871 Views
- Last post by sbesson
Wed Oct 19, 2016 7:29 am
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- CZI and JPEG XR
by Gebhard » Wed Oct 12, 2016 1:05 pm
- 2 Replies
- 1596 Views
- Last post by Gebhard
Mon Oct 17, 2016 10:40 am
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- Bio-Formats in open source digital pathology software
by pbankhead » Wed Oct 12, 2016 6:20 pm
- 2 Replies
- 1588 Views
- Last post by pbankhead
Fri Oct 14, 2016 3:23 pm
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- new Olympus Scan^R filesets error on import
by dsudar » Wed Jul 20, 2016 12:30 am
- 20 Replies
- 8674 Views
- Last post by dsudar
Tue Oct 11, 2016 8:24 pm
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- Image from Fusion-fx
by phm » Mon Sep 19, 2016 9:06 am
- 8 Replies
- 2521 Views
- Last post by dgault
Mon Oct 03, 2016 6:10 pm
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- CZI image to more series
by phm » Fri Sep 23, 2016 1:34 pm
- 3 Replies
- 1679 Views
- Last post by dgault
Mon Sep 26, 2016 1:31 pm
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- loci.formats.in.LeicaSCNReader - XML parsing failed
by darwinjob » Tue Sep 20, 2016 2:34 pm
- 2 Replies
- 1548 Views
- Last post by darwinjob
Thu Sep 22, 2016 10:54 am
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