Today we are releasing Bio-Formats 5.3.2, a bug fix release:
- ImageJ
- fixed race condition when opening multiple series from a dataset, as introduced by thumbnail loading changes in 5.3.0
- updated thumbnail generation to be faster for datasets containing an image pyramid
- Metamorph
- updated to read the refractive index and set RefractiveIndex on ObjectiveSettings in the generated OME-XML (thanks to Marc Bruce)
- Metamorph TIFF
- fixed Z and channel dimension counts when each channel has a unique Z position
- updated to read the emission wavelength and set EmissionWavelength on LightSourceSettings in the generated OME-XML
- QuickTime
- fixed incorrect image data when reading of tiles from single channel files
- file grouping
- fixed handling of loci.formats.in.MetadataOptions objects by the loci.formats.FileStitcher reader
- Documentation improvements:
- fixed extensions listed for Zeiss TIFF
- simplified markdown for creating tables
The software is available at:
http://downloads.openmicroscopy.org/bio-formats/5.3.2
and is available from the Java 8 update site for Fiji users (note that you will need to disable the 'Bio-Formats 5' update site if you currently have it enabled, as well as enabling the 'Java 8' updates - this functionality is available under "Manage update sites").
Any problems or comments, please use the OME Forums or mailing lists:
http://www.openmicroscopy.org/site/community
Regards,
The OME Team
