Today we are releasing Bio-Formats 5.5.1 which includes the following changes:
File format improvements:
- CellH5
- fix for HDF5SymbolTableException when recycling an IFormatReader to reopen another CellH5 file
- bug fix related to opening of subsets of CellH5 files, namely openBytes(r, no, x, y, w, h) for y>0
- Zeiss CZI
- fix pyramid resolution indexing for pyramids of different depths
- fix for incorrect channel names and colors
- Zeiss AxioVision ZVI
- correct parsing of epoch for Zeiss TIFF and Zeiss ZVI
Bug fixes:
- Command line tools
- fix for java.lang. NegativeArraySizeException caused by incorrect dimensions when using showinf via command line with options set to autoscale and crop
- Format tools
- fix for java.lang. IndexOutOfBoundsException when using getFilename with an image containing multiple samples per pixel channels and a single effective channel
Updated build system:
- Autogen jobs
- fix for gen-meta-support to locate available org.openmicroscopy:ome-xml sources from the Maven repository following the decoupling of the model components
- FileHandleTest
- exclude JHDF5 native libraries from FileHandleTest to enable CellH5 files to be included in daily tests
Documentation improvements:
- added a new example file for reading and writing of XZ and YZ orthogonal planes
Full details can be found at http://www.openmicroscopy.org/site/supp ... s-new.html
The software is available at:
http://downloads.openmicroscopy.org/bio-formats/5.5.1
and will shortly be available from the Java-8 update site for Fiji users.
Any problems or comments, please use the OME Forums or mailing lists:
http://www.openmicroscopy.org/site/community
Regards,
The OME Team
