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Opening a compressed DICOM stack in ImageJ

Historical discussions about the Bio-Formats library. Please look for and ask new questions at https://forum.image.sc/tags/bio-formats
Please note:
Historical discussions about the Bio-Formats library. Please look for and ask new questions at https://forum.image.sc/tags/bio-formats

If you are having trouble with image files, there is information about reporting bugs in the Bio-Formats documentation. Please send us the data and let us know what version of Bio-Formats you are using. For issues with your code, please provide a link to a public repository, ideally GitHub.

Opening a compressed DICOM stack in ImageJ

Postby thebadlizard » Thu Dec 18, 2014 2:50 pm

Hi,

I have a question about compressed DICOM images.

I'd like to open a stack of CT images saved as compressed DICOM images. I've installed the Bio-Formats plugin (up to date version), and it's great at opening 1 image at a time. Unfortunately I can't select more than 1 file, is there a way to import and read an entire stack of images?

Thank you in advance,

Chris
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Re: Opening a compressed DICOM stack in ImageJ

Postby mlinkert » Thu Dec 18, 2014 3:58 pm

Hi Chris,

If you select the "Group files with similar names" option in the "Bio-Formats Import Options" window, that should allow the entire stack to be read. If that doesn't work, please let us know.

-Melissa
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Re: Opening a compressed DICOM stack in ImageJ

Postby thebadlizard » Thu Dec 18, 2014 4:58 pm

Hi Melissa,

That's worked perfectly, thanks for the pointer!

Cheers,

Chris
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