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.nd2 -> .tif conversion issue (#2)

Historical discussions about the Bio-Formats library. Please look for and ask new questions at https://forum.image.sc/tags/bio-formats
Please note:
Historical discussions about the Bio-Formats library. Please look for and ask new questions at https://forum.image.sc/tags/bio-formats

If you are having trouble with image files, there is information about reporting bugs in the Bio-Formats documentation. Please send us the data and let us know what version of Bio-Formats you are using. For issues with your code, please provide a link to a public repository, ideally GitHub.

Re: .nd2 -> .tif conversion issue (#2)

Postby user » Mon Jan 16, 2017 11:18 pm

Great, glad to hear you located the root cause. For my recent uses of the command, I have been specifying "-series", "-channel", and "-timepoint" options to `bfconvert`, but not "-z". Looking forward to your upcoming patch.
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Re: .nd2 -> .tif conversion issue (#2)

Postby dgault » Fri Feb 03, 2017 4:29 pm

To follow up this conversion issue, the bug fix to prevent the initial IllegalArgumentException when using bfconvert has been included in the latest Bio-Formats release (version 5.3.3).

You can find it available at http://downloads.openmicroscopy.org/bio-formats/5.3.3/
A full list of changes included in this release can be found at http://www.openmicroscopy.org/site/supp ... s-new.html

With Thanks,
David Gault
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Re: .nd2 -> .tif conversion issue (#2)

Postby user » Fri Feb 03, 2017 7:20 pm

I'm very glad to hear that. Thanks for fixing it.
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