Multi-scene CZI files

[MSomerville]

Hi there,

Sorry for the delay I was having issues uploading the files but that's now complete.

Best wishes,

Michelle

[dgault]

Thank you, I have been able to test the submitted files this morning and was able to reproduce the behaviour you were seeing. The good news is that there is an easy work around for it. If you are using FIJI you can set the CZI autostich option and this should enable the files to be read and opened.

You can set the option using:
Plugins > Bio-Formats > Bio-formats Plugins Configuration > Formats > Zeiss CZI > Autostich

However the original issue with autostich turned off does look like a bug and I have opened a Trello card on the Bio-Formats board for that issue https://trello.com/c/BiD7ToLT/287-czi-f ... itched-off

[MSomerville]

Thank you very much for looking into this for us, it's much appreciated. I will try opening the files with your suggestion.

Best wishes,

Michelle