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problem opening RGB image saved as CZI

Historical discussions about the Bio-Formats library. Please look for and ask new questions at https://forum.image.sc/tags/bio-formats
Please note:
Historical discussions about the Bio-Formats library. Please look for and ask new questions at https://forum.image.sc/tags/bio-formats

If you are having trouble with image files, there is information about reporting bugs in the Bio-Formats documentation. Please send us the data and let us know what version of Bio-Formats you are using. For issues with your code, please provide a link to a public repository, ideally GitHub.

problem opening RGB image saved as CZI

Postby ebbwdan » Thu Feb 06, 2014 5:16 am

Hi

I have an issue opening RGB images (i.e. images recorded using an RGB camera) saved as CZI with Bioformats (4.4.10) in FIJI. I am using Zen 2012 (Blue) version 1.1.1.0, file version 1.1.13064.302. I have uploaded an example to OMERO.qa (called Bright_RGB).

Cheers,

Dan.
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Re: problem opening RGB image saved as CZI

Postby rleigh » Thu Feb 06, 2014 11:27 am

Hi Dan,

Thanks for uploading the image. I've tested this image with our current versions of 4.4, 5.0 prerelease and develop and all show exactly the same problem. The image is 16bit RGB with 14 significant bits per pixel, but this pixel format isn't being rendered correctly.

There's an open ticket for this (https://trac.openmicroscopy.org/ome/att ... ket/11233/). I've added you as a CC on this so you get notified on any changes.


Regards,
Roger
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