Open Microscopy Environment

Hello,
I have a problem for the new image format MetaMorph.
.TIF which replaces .stk.
with Loci I have the values X and Y but not Z
Do you know how to do

think

Pierre

Hi Pierre,

assuming you are trying to open a Metamorph TIFF file with Bio-Formats, could you tell us which environment you are using (Fiji/ImageJ, command-line, MATLAB...)? Also can you confirm you are using the latest version fo Bio-Format, i.e. 5.1.3?

Assuming you are using the latest version of Bio-Formats, it would be useful for us to see an example TIF file that fails to be read. You can upload such a sample file at the following URL http://qa.openmicroscopy.org.uk/qa/upload/.

Best,
Sebastien

Hi Sebastien,
yes i use bio-formats trunk build with ImageJ 1.50a

I just sent you the images by the URL

thanks

Pierre

for information the images are nom1_w1561 Em 600-50.TIF...

the voxel is X 0.26µm Y 0.26µm and Z 1.5µm

Hi,

Thank you for uploading your files, we were able to reproduce the issue with the latest release version of Bio-Formats(5.1.3).

A ticket has been created on this regard,
http://trac.openmicroscopy.org/ome/ticket/12977
and you have been added to the cc list.

Notifications will be sent to your email id, when there is a status change on the ticket.

Best,
Balaji