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kodak .BIP

Historical discussions about the Bio-Formats library. Please look for and ask new questions at https://forum.image.sc/tags/bio-formats
Please note:
Historical discussions about the Bio-Formats library. Please look for and ask new questions at https://forum.image.sc/tags/bio-formats

If you are having trouble with image files, there is information about reporting bugs in the Bio-Formats documentation. Please send us the data and let us know what version of Bio-Formats you are using. For issues with your code, please provide a link to a public repository, ideally GitHub.

kodak .BIP

Postby ingrid22 » Wed Nov 25, 2015 5:42 am

Hi,
I am trying to open a .bip file through ImageJ Bio-Formats plug-in, but it did not want to open. Is there any ways to get it open? Thanks!

I got this message:

ImageJ 1.50e; Java 1.6.0_20 [64-bit]; Windows 7 6.1; 19MB of 3045MB (<1%)

java.lang.StringIndexOutOfBoundsException: String index out of range: -1
at java.lang.String.substring(String.java:1937)
at loci.formats.in.KodakReader.readExtraMetadata(KodakReader.java:225)
at loci.formats.in.KodakReader.initFile(KodakReader.java:128)
at loci.formats.FormatReader.setId(FormatReader.java:1244)
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:482)
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:146)
at loci.plugins.in.Importer.showDialogs(Importer.java:141)
at loci.plugins.in.Importer.run(Importer.java:79)
at loci.plugins.LociImporter.run(LociImporter.java:81)
at ij.IJ.runUserPlugIn(IJ.java:212)
at ij.IJ.runPlugIn(IJ.java:176)
at ij.Executer.runCommand(Executer.java:136)
at ij.Executer.run(Executer.java:65)
at java.lang.Thread.run(Thread.java:619)
ingrid22
 
Posts: 1
Joined: Tue Nov 24, 2015 12:58 am

Re: kodak .BIP

Postby sbesson » Wed Nov 25, 2015 7:15 am

Hi Ingrid,

which version of the Bio-Formats plugin are you using? Would it be possible to upload a sample file at http://qa.openmicroscopy.org.uk/qa/upload/ to allow us to reproduce the problem and investigate a fix?

Best regards,
Sebastien
User avatar
sbesson
Team Member
 
Posts: 421
Joined: Tue Feb 28, 2012 7:20 pm


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