I read a BigTIFF file using the standard loci.formats.ImageReader
- Code: Select all
ImageReader tr = new ImageReader();
tr.setId("BigTIFF.tif");
The file reads fine, I can access the content, but I get this exception at tr.setId("BigTIFF.tif"):
- Code: Select all
java.io.IOException: null
at loci.common.xml.XMLTools.parseXML(XMLTools.java:436) ~[bioformats_package.jar:na]
at loci.common.xml.XMLTools.parseXML(XMLTools.java:414) ~[bioformats_package.jar:na]
at loci.common.xml.XMLTools.parseXML(XMLTools.java:393) ~[bioformats_package.jar:na]
at loci.formats.in.LeicaSCNReader.isThisType(LeicaSCNReader.java:111) ~[bioformats_package.jar:na]
at loci.formats.ImageReader.getReader(ImageReader.java:181) [bioformats_package.jar:na]
at loci.formats.ImageReader.setId(ImageReader.java:832) [bioformats_package.jar:na]
at TestReader.main(TestReader.java:24) [bin/:na]
Caused by: org.xml.sax.SAXParseException: Premature end of file.
at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.createSAXParseException(ErrorHandlerWrapper.java:203) ~[na:1.8.0_45]
at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.fatalError(ErrorHandlerWrapper.java:177) ~[na:1.8.0_45]
at com.sun.org.apache.xerces.internal.impl.XMLErrorReporter.reportError(XMLErrorReporter.java:441) ~[na:1.8.0_45]
at com.sun.org.apache.xerces.internal.impl.XMLErrorReporter.reportError(XMLErrorReporter.java:368) ~[na:1.8.0_45]
at com.sun.org.apache.xerces.internal.impl.XMLScanner.reportFatalError(XMLScanner.java:1436) ~[na:1.8.0_45]
at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl$PrologDriver.next(XMLDocumentScannerImpl.java:1019) ~[na:1.8.0_45]
at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:606) ~[na:1.8.0_45]
at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:510) ~[na:1.8.0_45]
at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:848) ~[na:1.8.0_45]
at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:777) ~[na:1.8.0_45]
at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:141) ~[na:1.8.0_45]
at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1213) ~[na:1.8.0_45]
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:649) ~[na:1.8.0_45]
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl.parse(SAXParserImpl.java:333) ~[na:1.8.0_45]
at javax.xml.parsers.SAXParser.parse(SAXParser.java:195) ~[na:1.8.0_45]
at loci.common.xml.XMLTools.parseXML(XMLTools.java:428) ~[bioformats_package.jar:na]
... 6 common frames omitted
Bio-formats 5.2.2
All this isn't critical, but it would be better to avoid the exception.
