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Saving in original format

General user discussion about using the OMERO platform to its fullest. Please ask new questions at https://forum.image.sc/tags/omero
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There are workflow guides for various OMERO functions on our help site - http://help.openmicroscopy.org

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Saving in original format

Postby lily88 » Sun Sep 29, 2013 8:42 pm

Hello everybody!!!

I need your help for a very stupid question. I took images with a Zeiss microscope and I saved them in .czi format. Now I have to modify these images (I need just to cut some area I'm not interested in) with ImageJ. I would like to keep the original format but when I click on save it save it as .tiff. I can choose other formats from the list (Save as>...) but I can't choose the .czi format or an option that allow me to keep the original format anyway. What can I do? I also tried to rename the image changing the file extension, but my laptop doesn't allow me to do it.
I'm sorry, I know it's very stupid but I'm really a beginner with this kind of stuff :oops:

Thank you very much!!!
:)
lily88
 
Posts: 2
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Re: Saving in original format

Postby rleigh » Mon Sep 30, 2013 10:40 am

Hi,

We support reading of many (over 120) file formats, including Zeiss CZI. However, we only support saving in a subset of open file formats, OME-TIFF being the expected default to use. We don't support saving in the Zeiss CZI format, I'm afraid.

Note that by using the Bio-Formats exporter (rather than Save As), you will have some additional options for the format you wish to save in (but this doesn't include CZI).

Regards,
Roger
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Re: Saving in original format

Postby lily88 » Mon Sep 30, 2013 1:07 pm

Ok, I understand.
Thank you very much!

Regards,

Lily
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