Reg uploading file formate

[mayav]

Hi,

I would like to know what all are the types we can upload in Omero /
currently we upload svs, jpeg and png.
is it possible to upload the dicom images, mri image sequence or ct image sequence and view like video or continuous image ?

if any plugin needed to install means kindly send us the how to install document,

Thanks

[jmoore]

Hi,

Hi Mayav,

I would like to know what all are the types we can upload in Omero /
currently we upload svs, jpeg and png.
is it possible to upload the dicom images, mri image sequence or ct image sequence and view like video or continuous image ?

Yes. OMERO supports any of the file formats supported by Bio-Formats. You can see the current list under https://docs.openmicroscopy.org/bio-formats/5.7.1/supported-formats.html

if any plugin needed to install means kindly send us the how to install document,

You shouldn't need to install any extra libraries.

Cheers,
~Josh.

[mayav]

Hi,

I tried to upload the dicom images but it show file format not supported.
And i tried to install the bio-formate in my linux machine, but i am not sure how to move forward .
my linux machine not having gui mode

kindly sort this issue

Thanks

[jmoore]

I tried to upload the dicom images but it show file format not supported.

I assume you are using OMERO.insight. Can you tell us the exact steps you've followed? Or show us screenshots?

And i tried to install the bio-formate in my linux machine, but i am not sure how to move forward .

You shouldn't need to install anything other than OMERO.insight.

Cheers,
~Josh.

[mayav]

Hi,

I am following this url

http://help.openmicroscopy.org/imagej.html and this
https://imagej.nih.gov/ij/docs/install/ ... ml#install

Yes i am using OMERO.insight to upload the files

[mayav]

In the ImageJ bioformats remote uploading

ImageJ 1.50i; Java 1.6.0_20 [32-bit]; Windows NT (unknown) 6.2; 3891K of 640MB (<1%)

java.lang.UnsupportedClassVersionError: loci/plugins/LociImporter : Unsupported major.minor version 51.0

This plugin requires Java 1.7 or later.

[Dominik]

Hi Mayav,

could you upload the dicom image you're having problems with to us?
If it's smaller than 2GB you can upload it here:
https://www.openmicroscopy.org/qa2/qa/upload/

That would make it easier to replicate your issue.

Kind Regards,
Dominik