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omero importer problems

PostPosted: Wed Aug 11, 2010 6:15 pm
by genetics_lab
I used bioformats to convert tif images to the ome.tif format. When I try to use the omero importer, I can't import the ome.tif files. I am able to import the .tif files, but the error I get when trying to import the ome.tif files is:

java.lang.IllegalArgumentException: Invalid series: 0.

I should say that I am using omero server version 4.1.1 and the newest version of bioformats. Perhaps there is a backwards compatibility issue?

Re: omero importer problems

PostPosted: Thu Aug 12, 2010 7:53 pm
by cxallan
If you can get us the file we can try and help as best we can. You can do so here:

http://qa.openmicroscopy.org.uk/qa/upload/

Re: omero importer problems

PostPosted: Thu Aug 12, 2010 9:55 pm
by genetics_lab
I just uploaded the images.

The thing that is puzzling to me is that the .tif files import just fine, but when I convert them to ome.tif using bioformats they do not import.

Thanks.

Re: omero importer problems

PostPosted: Fri Aug 13, 2010 9:01 am
by cxallan
Thanks. We'll take a look.