Open Microscopy Environment

Hi everyone,
I would like to extract time points from metadata files and I wonder if there is already a code for this? Which will be the best way to do this?
Best regards and thanks for your help,
Sara

Could you give us some more details:
- What coding environment are you using? Python? Java? Matlab?
- You want to know the timestamp (or delta-T) of every timepoint in a time-lapse image?

I would like to use Matlab and I want to know the delta-T in relation to the first time-point of the time-lapse image. Many thanks.

Hi Sara,

thanks for your question. We are currently working on and reviewing a Pull Request adding a getPlaneInfo function to the OMERO.matlab toolbox. If you want to try it (or adapt it), you should be able to query the DeltaT of individual planes using the following lines:

Code: Select all

planeInfo= getPlaneInfo(session, imageID, z, c, t);
deltaT = planeInfo.getDeltaT().getValue();


Let us know if this works,
Sebastien