Open Microscopy Environment

Hi,

when I try to login with an existing LDAP user that has not yet been (automatically) imported into omero, i.e. the user hasn't logged in yet and I want to do that for him/her on the command line so that his account gets created, Java crashes. The command I am trying to use is:

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omero login -s localhost -u jdoe --sudo=root

The crash looks like this:

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InternalException: Failed to connect: exception ::omero::RemovedSessionException
{
    serverStackTrace = ome.conditions.RemovedSessionException: Cannot find a user with name jdoe
        at ome.services.sessions.SessionManagerImpl.executeLookupUser(SessionManagerImpl.java:1239)
        at ome.services.sessions.SessionManagerImpl.access$100(SessionManagerImpl.java:87)
        at ome.services.sessions.SessionManagerImpl$2.doWork(SessionManagerImpl.java:314)
        at sun.reflect.GeneratedMethodAccessor263.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:606)
        at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
        at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
        at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
        at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:576)
        at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
        at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
        at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
        at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111)
        at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
        at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
        at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
        at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241)
        at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
        at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
        at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
        at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
        at com.sun.proxy.$Proxy69.doWork(Unknown Source)
        at ome.services.util.Executor$Impl.execute(Executor.java:457)
        at ome.services.sessions.SessionManagerImpl.createSession(SessionManagerImpl.java:306)
        at ome.services.sessions.SessionManagerImpl.createWithAgent(SessionManagerImpl.java:254)
        at ome.services.sessions.SessionBean$2.call(SessionBean.java:112)
        at ome.services.sessions.SessionBean$2.call(SessionBean.java:110)
        at java.util.concurrent.FutureTask.run(FutureTask.java:262)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
        at java.lang.Thread.run(Thread.java:745)

    serverExceptionClass = ome.conditions.RemovedSessionException
    message = Cannot find a user with name jdoe
}


So it is apparantly not possible to login via the CLI when using --sudo=root in case the LDAP user is not yet in the OMERO db.

What would be the proper way to do this?

Cheers,

Tristan

Hi Tristan,

thanks for the bug report. I certainly haven't seen nor tried this before. See https://trac.openmicroscopy.org.uk/ome/ticket/12597

If you know the user is in LDAP, though, you can workaround this by logging in as the root user and calling `ldap create`:

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bin/omero login root@localhost
bin/omero ldap create jdoe


Cheers,
~Josh