Open Microscopy Environment

I have placed a series of DoubleAnnotations, referenced by my Images, in an OME-TIFF.
When imported into OMERO, I can see the values, but no indication of their ID or Description. I have tried linking a CommentAnnotation to the DoubleAnnotation, and this also does not help.

Is there a way to see the ID or Description or linked CommentAnnotation next to each Double value?

Is there a way to search in Omero based on these values, or the values of CommentAnnotation?

(I can't seem to search anything successfully in Omero at the moment, including filenames or ImageDescriptions. Not sure why.)

Thanks - gary

Sorry, I just discovered XMLValid. Looks like my Annotation ID's are invalid. Is the only valid ID something like "Annotation:2"?
g

In the webclient, namespace and description are displayed for Double Annotations in a tool-tip.

Just for the record, here's the code I just used to add this.

Code: Select all

>>> da = omero.model.DoubleAnnotationI()
>>> da.setDoubleValue(omero.rtypes.rdouble(200))
>>> da.setDescription(omero.rtypes.rstring("Test display of description in clients"))
>>> da.setNs(omero.rtypes.rstring("omero.test.ns"))
>>> l = omero.model.ProjectAnnotationLinkI()
>>> l.setParent(omero.model.ProjectI(701, False))
>>> l.setChild(da)
>>> conn.getUpdateService().saveObject(l)


Thanks, Will.
I fixed the XML details, and I see that this works for value (Double, Boolean, Timestamp) annotations in the webclient (but not the OMERO.insight win client).
Nothing comparable for CommentAnnotations?
Thanks - gary

For the searching issues you're having, please read the "Missing Search Results" and "Re-indexing" sections here:
https://www.openmicroscopy.org/site/sup ... ch-results

Certainly Comments should be found by searches.
If you just check the "Annotation" checkbox in the Insight / web client searching, it will only search for comments, files tags etc.

I have added the complete support for display of Namespace and Description on all annotations to our to-do list.

Will.

Thanks a lot, WIll.
The search problems were solved with rebuilding of the index.
BTW, I've also noticed that the deltaT values for each frame (under the acquisition tab, for each channel) is another thing that works properly in the web client, but not in the Omero.insight (5.0.5 Win) client.
Best regards,
Gary

Hi Gary,
may I ask you, what you mean with "deltaT values don't work properly in Insight"? Then I could create a ticket for that, respectively start working on a fix for that issue. I just tested this with a couple of images and couldn't see a difference between Web and Insight. Is this related to specific images only?
Kind Regards,
Dominik

Hi Dominik - please see http://qa.openmicroscopy.org.uk/qa/feedback/10330
Best - gary

Thanks Gary for submitting an example file. You are right, OMERO.web shows deltaT values whereas Insight doesn't show any values for the provided images. I'll investigate this issue.
Kind Regards,
Dominik

Hi Gary,

FYI: Web client display of ID, description and namespaces for all annotations are in https://github.com/openmicroscopy/openm ... /pull/3175