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Problem upgrading from 5.4.1 to 5.4.5

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The OMERO.server installation documentation begins here and you can find OMERO.web deployment documentation here.
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Problem upgrading from 5.4.1 to 5.4.5

Postby phm » Thu Mar 29, 2018 4:37 pm

Hi,
I have a problem with omero web after upgrading Omero from 5.4.1 to 5.4.5. The home page didn't show the images or icons. I notice that in my old nginx conf the static location is :
Code: Select all
# weblitz django apps serve media from here
    location /omero/static {
        alias /home/omero/OMERO.server/lib/python/omeroweb/static;
    }

However in the 5.4.5 version there is no static folder
Code: Select all
ls -l OMERO.server-5.4.5-ice36-b83/lib/python/omeroweb/
total 208
drwxr-xr-x 2 omero omero  4096 29 mars  18:23 api
-rw-r--r-- 1 omero omero  7899 27 mars  11:11 connector.py
-rw-r--r-- 1 omero omero  8665 29 mars  16:41 connector.pyc
-rw-r--r-- 1 omero omero   278 27 mars  11:11 custom_context_processor.py
-rw-r--r-- 1 omero omero  3354 27 mars  11:11 custom_forms.py
-rw-r--r-- 1 omero omero 22728 27 mars  11:11 decorators.py
drwxr-xr-x 5 omero omero  4096 29 mars  18:23 feedback
-rw-r--r-- 1 omero omero  8848 27 mars  11:11 filesessionstore.py
-rw-r--r-- 1 omero omero  1413 27 mars  11:11 http.py
-rw-r--r-- 1 omero omero     0 27 mars  11:11 __init__.py
-rw-r--r-- 1 omero omero   143 29 mars  16:41 __init__.pyc
drwxr-xr-x 2 omero omero  4096 29 mars  18:23 license
-rw-r--r-- 1 omero omero  1939 27 mars  11:11 manage.py
-rw-r--r-- 1 omero omero 47523 27 mars  11:11 settings.py
-rw-r--r-- 1 omero omero 35622 29 mars  16:41 settings.pyc
drwxr-xr-x 2 omero omero  4096 29 mars  18:23 testlib
-rw-r--r-- 1 omero omero  3485 27 mars  11:11 urls.py
-rw-r--r-- 1 omero omero  1562 27 mars  11:11 utils.py
-rw-r--r-- 1 omero omero  1514 29 mars  16:41 utils.pyc
drwxr-xr-x 5 omero omero  4096 29 mars  18:23 webadmin
drwxr-xr-x 6 omero omero  4096 29 mars  18:23 webclient
drwxr-xr-x 5 omero omero  4096 29 mars  18:23 webgateway
drwxr-xr-x 2 omero omero  4096 29 mars  18:23 webredirect
-rw-r--r-- 1 omero omero  1739 27 mars  11:11 wsgi.py


In the older version 5.4.1 the staic folder exists
Code: Select all
ls -l OMERO.server-5.4.1-ice36-b75/lib/python/omeroweb/
total 220
drwxr-xr-x  2 omero omero  4096 11 déc.  17:34 api
-rw-r--r--  1 omero omero  7899 22 nov.  20:38 connector.py
-rw-r--r--  1 omero omero  8665  7 déc.  03:43 connector.pyc
-rw-r--r--  1 omero omero   278 22 nov.  20:38 custom_context_processor.py
-rw-r--r--  1 omero omero  3354 22 nov.  20:38 custom_forms.py
-rw-r--r--  1 omero omero 22728 22 nov.  20:38 decorators.py
drwxr-xr-x  5 omero omero  4096 11 déc.  17:34 feedback
-rw-r--r--  1 omero omero  8848 22 nov.  20:38 filesessionstore.py
-rw-r--r--  1 omero omero  7414 11 déc.  17:34 filesessionstore.pyc
-rw-r--r--  1 omero omero  1413 22 nov.  20:38 http.py
-rw-r--r--  1 omero omero     0 22 nov.  20:38 __init__.py
-rw-r--r--  1 omero omero   143  7 déc.  03:43 __init__.pyc
drwxr-xr-x  2 omero omero  4096 22 nov.  20:38 license
-rw-r--r--  1 omero omero  1939 22 nov.  20:38 manage.py
-rw-r--r--  1 omero omero 47526 22 nov.  20:38 settings.py
-rw-r--r--  1 omero omero 35622  7 déc.  03:43 settings.pyc
drwxrwxr-x 10 omero omero  4096 11 déc.  17:34 static
drwxr-xr-x  2 omero omero  4096 22 nov.  20:38 testlib
-rw-r--r--  1 omero omero  3485 22 nov.  20:38 urls.py
-rw-r--r--  1 omero omero  1562 22 nov.  20:38 utils.py
-rw-r--r--  1 omero omero  1514  7 déc.  03:43 utils.pyc
drwxr-xr-x  5 omero omero  4096 11 déc.  17:34 webadmin
drwxr-xr-x  6 omero omero  4096 11 déc.  17:34 webclient
drwxr-xr-x  5 omero omero  4096 11 déc.  17:34 webgateway
drwxr-xr-x  2 omero omero  4096 11 déc.  17:34 webredirect
-rw-r--r--  1 omero omero  1739 22 nov.  20:38 wsgi.py


How to "generate" the static folder or shuold I just copy the old folder to the new version.

Philippe
phm
 
Posts: 185
Joined: Tue Mar 19, 2013 3:39 pm
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Re: Problem upgrading from 5.4.1 to 5.4.5

Postby wmoore » Fri Mar 30, 2018 11:55 am

Hi Philippe,

The static folder should be created when you first run OMERO.web with:

Code: Select all
$ bin/omero web start


Or you can run this to create the static directory and copy files into it without
starting OMERO.web

Code: Select all
$ bin/omero web syncmedia


Did you change the way you deployed OMERO.web between 5.4.1 and 5.4.5?
Are you deploying the OMERO server and OMERO.web together, or do you have a separate deployment for OMERO.web, e.g. as described http://docs.openmicroscopy.org/omero/5. ... ce3.6.html ?

Regards,

Will
User avatar
wmoore
Team Member
 
Posts: 674
Joined: Mon May 18, 2009 12:46 pm
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Re: Problem upgrading from 5.4.1 to 5.4.5

Postby phm » Fri Mar 30, 2018 2:09 pm

wmoore wrote:Hi Philippe,

The static folder should be created when you first run OMERO.web with:

Code: Select all
$ bin/omero web start


Or you can run this to create the static directory and copy files into it without
starting OMERO.web

Code: Select all
$ bin/omero web syncmedia


Did you change the way you deployed OMERO.web between 5.4.1 and 5.4.5?
Are you deploying the OMERO server and OMERO.web together, or do you have a separate deployment for OMERO.web, e.g. as described http://docs.openmicroscopy.org/omero/5. ... ce3.6.html ?

Regards,

Will

Hi, Will

Omero web is deployed separetly from omero for older and new version.
The problem with images ans icons occurs either from systmtcl and omerwebenv
Best
Philippe
phm
 
Posts: 185
Joined: Tue Mar 19, 2013 3:39 pm
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Re: Problem upgrading from 5.4.1 to 5.4.5

Postby wmoore » Wed Apr 04, 2018 9:37 am

What do you see when you try to create the static directory from omerowebvenv with:

Code: Select all
$ bin/omero web start
# or
$ bin/omero web syncmedia

?
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wmoore
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Posts: 674
Joined: Mon May 18, 2009 12:46 pm
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Re: Problem upgrading from 5.4.1 to 5.4.5

Postby phm » Mon Apr 09, 2018 12:09 pm

wmoore wrote:What do you see when you try to create the static directory from omerowebvenv with:

Code: Select all
$ bin/omero web start
# or
$ bin/omero web syncmedia

?


I solve the problem.
Code: Select all
omero@omero:~$>omero web start
Invalid CACHES (omero.web.caches = '{"default": {"BACKEND": "django_redis.cache.\nRedisCache", "LOCATION": "redis://127.0.0.1:6379/0"}}'). Invalid control character at: line 1 column 45 (char 44). OMERO.web offers alternative session backends to automatically delete stale data using the cache session store backend, see :djangodoc:`Django cached session documentation <topics/http/sessions/#using-cached-sessions>` for more details.
omero@omero:~$>omero web syncmedia
Invalid CACHES (omero.web.caches = '{"default": {"BACKEND": "django_redis.cache.\nRedisCache", "LOCATION": "redis://127.0.0.1:6379/0"}}'). Invalid control character at: line 1 column 45 (char 44). OMERO.web offers alternative session backends to automatically delete stale data using the cache session store backend, see :djangodoc:`Django cached session documentation <topics/http/sessions/#using-cached-sessions>` for more details.

Code: Select all
omero@omero:~$>omero config set omero.web.caches

omero@omero:~$>omero web syncmedia
Copying '/usr/lib/python2.7/site-packages/omero_fpbioimage/static/fpbioimage/openwith.js'
Copying '/usr/lib/python2.7/site-packages/omero_fpbioimage/static/fpbioimage/resources/LAGlogo.png'
Copying '/usr/lib/python2.7/site-packages/omero_fpbioimage/static/fpbioimage/resources/cambridgeLogo.png'
Copying '/usr/lib/python2.7/site-packages/omero_fpbioimage/static/fpbioimage/resources/fullscreen.png'
Copying '/usr/lib/python2.7/site-packages/omero_fpbioimage/static/fpbioimage/FPBioimage/FPBioimage.asm.code.unityweb'
Copying '/usr/lib/python2.7/site-packages/omero_fpbioimage/static/fpbioimage/FPBioimage/UnityLoader.js'
Copying '/usr/lib/python2.7/site-packages/omero_fpbioimage/static/fpbioimage/FPBioimage/FPBioimage.data.unityweb'
Copying '/usr/lib/python2.7/site-packages/omero_fpbioimage/static/fpbioimage/FPBioimage/full.png'
Copying '/usr/lib/python2.7/site-packages/omero_fpbioimage/static/fpbioimage/FPBioimage/FPBioimage.json'
Copying '/usr/lib/python2.7/site-packages/omero_fpbioimage/static/fpbioimage/FPBioimage/FPBioimage.asm.memory.unityweb'
Copying '/usr/lib/python2.7/site-packages/omero_fpbioimage/static/fpbioimage/FPBioimage/FPBioimage.asm.framework.unityweb'
Copying '/usr/lib/python2.7/site-packages/omero_fpbioimage/static/fpbioimage/FPBioimage/download.js'
Copying '/usr/lib/python2.7/site-packages/omero_fpbioimage/static/fpbioimage/FPBioimage/FPProgress.js'
Copying '/usr/lib/python2.7/site-packages/omero_fpbioimage/static/fpbioimage/FPBioimage/logo.png'
................
Copying '/home/omero/OMERO.server/lib/python/omeroweb/webgateway/static/3rdparty/JQuerySpinBtn-1.3a/img/spinbtn_updn.gif'
Copying '/home/omero/OMERO.server/lib/python/omeroweb/webgateway/static/3rdparty/underscore/underscore-1.8.3-min.js'
Post-processed 'omeroweb.viewer.min.css' as 'omeroweb.viewer.min.css'
Post-processed 'omeroweb.viewer.min.js' as 'omeroweb.viewer.min.js'

710 static files copied to '/home/omero/OMERO.server/lib/python/omeroweb/static', 2 post-processed.



Then omero web is working
Thanks

Philippe
phm
 
Posts: 185
Joined: Tue Mar 19, 2013 3:39 pm
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