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Error: Server is not responding, please contact administ.

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The OMERO.server installation documentation begins here and you can find OMERO.web deployment documentation here.

Error: Server is not responding, please contact administ.

Postby Ahmed » Sun Sep 18, 2011 10:11 pm

Hello:

I'm trying to deploy OMERO server on my server. When I tried to change java server port, I misconfiguration the server and it stopped working. and I got this error

"Error: Server is not responding, please contact administrator. "
I changed my port prefix to number five.

bin/omero admin ports --prefix=5

output:
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Appended omero.port=54064 to ./etc/ice.config
No values found for 4061
No values found for 4063
No values found for 4064





When I try to login from omero.web it doesn't work. Even after I changed the port to 504064 in omero.web

I changed by using the following command:
bin/omero config set omero.web.server_list '[["localhost", 54064, "omero"]]'


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[omero@data omero_server]$ bin/omero admin diagnostics

output
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================================================================================
OMERO Diagnostics Beta4.2.2-r8718-Beta4.2-b56
================================================================================
       

Commands:   java -version                  1.7.0     (/usr/bin/java)
Commands:   python -V                      2.4.3     (/usr/bin/python)
Commands:   icegridnode --version          3.3.1     (/usr/bin/icegridnode)
Commands:   icegridadmin --version         3.3.1     (/usr/bin/icegridadmin)
Commands:   psql --version                 8.1.23    (/usr/bin/psql)

Server:     icegridnode                    running
Server:     Blitz-0                        active (pid = 26979, enabled)
Server:     DropBox                        inactive (disabled)
Server:     FileServer                     active (pid = 27008, enabled)
Server:     Indexer-0                      active (pid = 27009, enabled)
Server:     MonitorServer                  inactive (disabled)
Server:     OMERO.Glacier2                 active (pid = 27016, enabled)
Server:     OMERO.IceStorm                 active (pid = 27018, enabled)
Server:     Processor-0                    active (pid = 27019, enabled)
Server:     Repository-1                   error: node `repo' couldn't be reached:
the node is not active
Server:     Tables-0                       inactive (disabled)
Server:     TestDropBox                    inactive (enabled)

Log dir:    /data/omero_server/var/log     exists

Log files:  Blitz-0.log                    17.0 KB       errors=0    warnings=10 
Log files:  DropBox.log                    0.0 KB        errors=2    warnings=0   
Log files:  FileServer.log                 0.0 KB       
Log files:  Indexer-0.log                  2.0 KB        errors=0    warnings=9   
Log files:  MonitorServer.log              0.0 KB        errors=1    warnings=0   
Log files:  OMEROweb.log                   1.0 KB        errors=4    warnings=1   
Log files:  Processor-0.log                0.0 KB       
Log files:  Tables-0.log                   n/a
Log files:  TestDropBox.log                n/a
Log files:  master.err                     0.0 KB       
Log files:  master.out                     0.0 KB       
Log files:  Total size                     0.02 MB

Parsing Blitz-0.log:[line:17] => Server restarted <=

Environment:OMERO_HOME=/data/omero_server/
Environment:OMERO_NODE=(unset)             
Environment:OMERO_MASTER=(unset)           
Environment:PATH=/usr/kerberos/sbin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/home/ahmed/bin:/sbin/:/usr/sbin:/usr/java/default//bin:/usr/java/default//bin:/usr/share/Ice-3.3.1/:/bin:/data/omero_server//bin
Environment:ICE_HOME=/usr/share/Ice-3.3.1/
Environment:LD_LIBRARY_PATH=/usr/share/java:/usr/lib:
Environment:DYLD_LIBRARY_PATH=/usr/share/java:/usr/lib/::/usr/share/Ice-3.3.1

OMERO data dir: '/data/omero_server/'   Exists? True   Is writable? True
OMERO.web status... DEVELOPMENT: You will have to check status by hand!



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[omero@data omero_server]$ lsof -i |grep 26979|grep LISTEN

output
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java      26979 omero  103u  IPv4 1210203       TCP foo.bar.org:47045 (LISTEN)
java      26979 omero  122u  IPv4 1210219       TCP *:35026 (LISTEN)




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[omero@data log]$ cat OMEROweb.log


output
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Sun, 18 Sep 2011 18:02:36 root         INFO     Application Starting...
Sun, 18 Sep 2011 23:02:48 views-admin  INFO     INIT '27200'
Sun, 18 Sep 2011 23:02:48 views-web    INFO     INIT '27200'
Sun, 18 Sep 2011 23:02:48 webgateway   ERROR    Critical error during connect, retrying after _purge
Sun, 18 Sep 2011 23:02:48 webgateway   INFO     reached connector_pool_size (70), size after purge: (0)
Sun, 18 Sep 2011 23:02:48 webgateway   ERROR    Critical error during connect, retrying after _purge
Sun, 18 Sep 2011 23:02:48 webgateway   INFO     reached connector_pool_size (70), size after purge: (0)
Sun, 18 Sep 2011 23:02:52 omero.util.UpgradeCheck INFO     no update needed
Sun, 18 Sep 2011 23:02:52 webgateway   INFO     getBlitzConnection(host=localhost, port=504064, ssl=False, username=root)
Sun, 18 Sep 2011 23:02:52 webgateway   ERROR    Critical error during connect, retrying after _purge
Sun, 18 Sep 2011 23:02:52 webgateway   INFO     reached connector_pool_size (70), size after purge: (0)
Sun, 18 Sep 2011 23:02:52 webgateway   ERROR    Critical error during connect, retrying after _purge
Sun, 18 Sep 2011 23:02:52 webgateway   INFO     reached connector_pool_size (70), size after purge: (0)
Sun, 18 Sep 2011 23:02:52 views-admin  INFO     Open connection is not available
Sun, 18 Sep 2011 18:04:10 omero.util.UpgradeCheck WARNING  UPGRADE AVAILABLE:Please upgrade to Beta-4.3.1 See http://trac.openmicroscopy.org.uk/omero for the latest version





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[omero@data log]$ cat Blitz-0.log



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2011-09-18 18:00:47,640 INFO  [                ome.services.blitz.Entry] (      main) Creating OMERO.blitz. Please wait...
2011-09-18 18:00:48,716 INFO  [ng.ShutdownSafeEhcacheManagerFactoryBean] (      main) Initializing EHCache CacheManager
2011-09-18 18:00:50,907 INFO  [  ome.services.fulltext.FullTextAnalyzer] (      main) Initialized FullTextAnalyzer
2011-09-18 18:00:50,957 WARN  [ch.engine.DocumentBuilderContainedEntity] (      main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead.
2011-09-18 18:00:50,969 WARN  [ch.engine.DocumentBuilderContainedEntity] (      main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead.
2011-09-18 18:00:50,977 WARN  [ch.engine.DocumentBuilderContainedEntity] (      main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead.
2011-09-18 18:00:50,999 WARN  [ch.engine.DocumentBuilderContainedEntity] (      main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead.
2011-09-18 18:00:51,000 WARN  [ch.engine.DocumentBuilderContainedEntity] (      main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead.
2011-09-18 18:00:51,021 WARN  [ch.engine.DocumentBuilderContainedEntity] (      main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead.
2011-09-18 18:00:51,021 WARN  [ch.engine.DocumentBuilderContainedEntity] (      main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead.
2011-09-18 18:00:51,031 WARN  [ch.engine.DocumentBuilderContainedEntity] (      main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead.
2011-09-18 18:00:51,049 WARN  [ch.engine.DocumentBuilderContainedEntity] (      main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead.
2011-09-18 18:00:53,313 INFO  [        ome.services.db.DatabaseIdentity] (      main) Using LSID format: urn:lsid:export.openmicroscopy.org:%s:b6e2c742-a7d0-4358-a681-2b286a5d232f_%s%s
2011-09-18 18:00:53,387 INFO  [    ome.services.fulltext.FullTextThread] (      main) Initializing Full-Text Indexer
2011-09-18 18:00:53,403 INFO  [          ome.services.util.DBPatchCheck] (      main) Verified database patch: OMERO4.2__0
2011-09-18 18:00:53,669 INFO  [    ome.services.util.ServerVersionCheck] (      main) -------------------------------------------------
2011-09-18 18:00:53,669 INFO  [    ome.services.util.ServerVersionCheck] (      main) OMERO Version: Beta4.2.2-r8718-Beta4.2-b56 Ready.
2011-09-18 18:00:53,669 INFO  [    ome.services.util.ServerVersionCheck] (      main) -------------------------------------------------
2011-09-18 18:00:55,511 WARN  [                 ome.system.UpgradeCheck] (      main) UPGRADE AVAILABLE:Please upgrade to Beta-4.3.1 See http://trac.openmicroscopy.org.uk/omero for the latest version
2011-09-18 18:00:55,520 INFO  [    ome.tools.hibernate.ExtendedMetadata] (      main) Calculating ExtendedMetadata...
2011-09-18 18:00:55,651 INFO  [.services.scheduler.SchedulerFactoryBean] (      main) Starting Quartz Scheduler now
2011-09-18 18:00:55,657 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.util.NamespaceCheck.namespaceCheck
2011-09-18 18:00:55,657 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:   [null, ome.tools.spring.InternalServiceFactory@1039de29]
2011-09-18 18:00:55,791 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:   user=0,group=0,event=701(Internal),sess=748477e8-437c-4d44-8977-2f7362391cf1
2011-09-18 18:00:55,907 INFO  [                 org.perf4j.TimingLogger] (      main) start[1316383255657] time[250] tag[omero.call.success.ome.services.util.NamespaceCheck$1.doWork]
2011-09-18 18:00:55,907 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:   null
2011-09-18 18:00:56,087 INFO  [e.services.blitz.util.BlitzConfiguration] (      main) Initializing Ice.Communicator
2011-09-18 18:00:56,237 INFO  [            ome.services.blitz.fire.Ring] (      main) Checking cluster
2011-09-18 18:00:56,248 INFO  [        ome.services.blitz.fire.Registry] (      main) Found 0 cluster node(s) : []
2011-09-18 18:00:56,249 INFO  [            ome.services.blitz.fire.Ring] (      main) Got 0 cluster uuids : []
2011-09-18 18:00:56,249 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.getManagerList
2011-09-18 18:00:56,249 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:   [null, ome.tools.spring.InternalServiceFactory@50e22d61]
2011-09-18 18:00:56,250 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:   user=0,group=0,event=null(Internal),sess=748477e8-437c-4d44-8977-2f7362391cf1
2011-09-18 18:00:56,263 INFO  [                 org.perf4j.TimingLogger] (      main) start[1316383256249] time[14] tag[omero.call.success.ome.services.blitz.fire.Ring$2.doWork]
2011-09-18 18:00:56,263 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:   (cc2b7b40-bc8f-4863-ac94-0c018d32285e)
2011-09-18 18:00:56,263 INFO  [            ome.services.blitz.fire.Ring] (      main) Purging node: cc2b7b40-bc8f-4863-ac94-0c018d32285e
2011-09-18 18:00:56,288 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.executeUpdate - set closed = now()
2011-09-18 18:00:56,288 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:   [null, ome.tools.spring.InternalServiceFactory@3cba1ad6]
2011-09-18 18:00:56,324 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:   user=0,group=0,event=702(Internal),sess=748477e8-437c-4d44-8977-2f7362391cf1
2011-09-18 18:00:56,342 INFO  [                 org.perf4j.TimingLogger] (      main) start[1316383256288] time[54] tag[omero.call.success.ome.services.blitz.fire.Ring$3.doWork]
2011-09-18 18:00:56,342 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:   0
2011-09-18 18:00:56,342 INFO  [            ome.services.blitz.fire.Ring] (      main) Removed 0 entries with value cc2b7b40-bc8f-4863-ac94-0c018d32285e
2011-09-18 18:00:56,343 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.setManagerDown
2011-09-18 18:00:56,343 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:   [null, ome.tools.spring.InternalServiceFactory@7bb28fd5]
2011-09-18 18:00:56,361 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:   user=0,group=0,event=703(Internal),sess=748477e8-437c-4d44-8977-2f7362391cf1
2011-09-18 18:00:56,366 INFO  [                 org.perf4j.TimingLogger] (      main) start[1316383256343] time[23] tag[omero.call.success.ome.services.blitz.fire.Ring$4.doWork]
2011-09-18 18:00:56,366 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:   1
2011-09-18 18:00:56,367 INFO  [            ome.services.blitz.fire.Ring] (      main) Removed manager: cc2b7b40-bc8f-4863-ac94-0c018d32285e
2011-09-18 18:00:56,367 INFO  [            ome.services.blitz.fire.Ring] (      main) handleRingShutdown: cc2b7b40-bc8f-4863-ac94-0c018d32285e
2011-09-18 18:00:56,367 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.addManager
2011-09-18 18:00:56,367 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:   [null, ome.tools.spring.InternalServiceFactory@7b2ae195]
2011-09-18 18:00:56,385 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:   user=0,group=0,event=704(Internal),sess=748477e8-437c-4d44-8977-2f7362391cf1
2011-09-18 18:00:56,392 INFO  [       ome.security.basic.CurrentDetails] (      main) Adding log:INSERT,class ome.model.meta.Node,701
2011-09-18 18:00:56,410 INFO  [                 org.perf4j.TimingLogger] (      main) start[1316383256367] time[43] tag[omero.call.success.ome.services.blitz.fire.Ring$5.doWork]
2011-09-18 18:00:56,410 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:   ome.model.meta.Node:Id_701
2011-09-18 18:00:56,415 INFO  [        ome.services.blitz.fire.Registry] (      main) Added ClusterNode/748477e8-437c-4d44-8977-2f7362391cf1 to registry
2011-09-18 18:00:56,449 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.scripts.ScriptRepoHelper.loadAll(true)
2011-09-18 18:00:56,449 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:   [null, ome.tools.spring.InternalServiceFactory@9d4d8fc]
2011-09-18 18:00:56,459 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:   user=0,group=0,event=705(Internal),sess=748477e8-437c-4d44-8977-2f7362391cf1
2011-09-18 18:00:56,553 INFO  [                 org.perf4j.TimingLogger] (      main) start[1316383256449] time[104] tag[omero.call.success.ome.services.scripts.ScriptRepoHelper$6.doWork]
2011-09-18 18:00:56,554 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:   (ome.model.core.OriginalFile:Id_1, ome.model.core.OriginalFile:Id_2, ome.model.core.OriginalFile:Id_3, ... 8 more)
2011-09-18 18:00:56,581 INFO  [.services.blitz.repo.AbstractRepositoryI] (      main) Initializing repository in /data/omero_server/
2011-09-18 18:00:56,586 INFO  [.services.blitz.repo.AbstractRepositoryI] (      main) Initializing repository in /data/omero_server/./lib/scripts
2011-09-18 18:00:56,589 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.util.NamespaceCheck.namespaceCheck
2011-09-18 18:00:56,589 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:   [null, ome.tools.spring.InternalServiceFactory@26efec43]
2011-09-18 18:00:56,597 INFO  [        ome.services.util.ServiceHandler] (3-thread-3)  Executor.doWork -- ome.services.roi.GeomTool.backgroundSynchronization
2011-09-18 18:00:56,597 INFO  [        ome.services.util.ServiceHandler] (3-thread-3)  Args:   [null, ome.tools.spring.InternalServiceFactory@1744d4c6]
2011-09-18 18:00:56,599 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:   user=0,group=0,event=706(Internal),sess=748477e8-437c-4d44-8977-2f7362391cf1
2011-09-18 18:00:56,602 INFO  [                 org.perf4j.TimingLogger] (      main) start[1316383256589] time[13] tag[omero.call.success.ome.services.util.NamespaceCheck$1.doWork]
2011-09-18 18:00:56,602 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:   null
2011-09-18 18:00:56,607 INFO  [        ome.services.util.ServiceHandler] (3-thread-4)  Executor.doWork -- ome.services.blitz.repo.LegacyRepositoryI.takeover
2011-09-18 18:00:56,607 INFO  [        ome.services.util.ServiceHandler] (3-thread-4)  Args:   [null, ome.tools.spring.InternalServiceFactory@776e0644]
2011-09-18 18:00:56,607 INFO  [        ome.services.util.ServiceHandler] (3-thread-5)  Executor.doWork -- ome.services.blitz.repo.ScriptRepositoryI.takeover
2011-09-18 18:00:56,607 INFO  [        ome.services.util.ServiceHandler] (3-thread-5)  Args:   [null, ome.tools.spring.InternalServiceFactory@688cf1bd]
2011-09-18 18:00:56,625 INFO  [    ome.services.blitz.util.CheckAllJobs] (  Thread-7) Waiting 120 secs. for callbacks
2011-09-18 18:00:56,626 INFO  [         ome.security.basic.EventHandler] (3-thread-3)  Auth:   user=0,group=0,event=707(Internal),sess=748477e8-437c-4d44-8977-2f7362391cf1
2011-09-18 18:00:56,626 INFO  [                ome.services.blitz.Entry] (      main) OMERO.blitz now accepting connections.
2011-09-18 18:00:56,626 INFO  [         ome.security.basic.EventHandler] (3-thread-4)  Auth:   user=0,group=0,event=708(Internal),sess=748477e8-437c-4d44-8977-2f7362391cf1
2011-09-18 18:00:56,626 INFO  [         ome.security.basic.EventHandler] (3-thread-5)  Auth:   user=0,group=0,event=709(Internal),sess=748477e8-437c-4d44-8977-2f7362391cf1
2011-09-18 18:00:56,630 INFO  [                 org.perf4j.TimingLogger] (3-thread-3) start[1316383256597] time[33] tag[omero.call.success.ome.services.roi.GeomTool$1.doWork]
2011-09-18 18:00:56,630 INFO  [        ome.services.util.ServiceHandler] (3-thread-3)  Rslt:   null
2011-09-18 18:00:56,631 INFO  [.services.blitz.repo.AbstractRepositoryI] (3-thread-5) Opened repository scripts (uuid=ScriptRepo)
2011-09-18 18:00:56,632 INFO  [.services.blitz.repo.AbstractRepositoryI] (3-thread-4) Opened repository omero_server (uuid=4cd23546-1329-41f4-9c87-1445b0335e0d)
2011-09-18 18:00:56,645 INFO  [        ome.services.blitz.fire.Registry] (3-thread-5) Updated InternalRepository-ScriptRepo in registry
2011-09-18 18:00:56,646 INFO  [        ome.services.blitz.fire.Registry] (3-thread-4) Updated InternalRepository-4cd23546-1329-41f4-9c87-1445b0335e0d in registry
2011-09-18 18:00:56,648 INFO  [        ome.services.blitz.fire.Registry] (3-thread-5) Updated PublicRepository-ScriptRepo in registry
2011-09-18 18:00:56,650 INFO  [        ome.services.blitz.fire.Registry] (3-thread-4) Updated PublicRepository-4cd23546-1329-41f4-9c87-1445b0335e0d in registry
2011-09-18 18:00:56,652 INFO  [.services.blitz.repo.AbstractRepositoryI] (3-thread-5) Repository now active
2011-09-18 18:00:56,652 INFO  [.services.blitz.repo.AbstractRepositoryI] (3-thread-4) Repository now active
2011-09-18 18:00:56,655 INFO  [                 org.perf4j.TimingLogger] (3-thread-5) start[1316383256607] time[48] tag[omero.call.success.ome.services.blitz.repo.AbstractRepositoryI$GetOrCreateRepo.doWork]
2011-09-18 18:00:56,655 INFO  [        ome.services.util.ServiceHandler] (3-thread-5)  Rslt:   ome.model.core.OriginalFile:Id_51
2011-09-18 18:00:56,656 INFO  [                 org.perf4j.TimingLogger] (3-thread-4) start[1316383256607] time[49] tag[omero.call.success.ome.services.blitz.repo.AbstractRepositoryI$GetOrCreateRepo.doWork]
2011-09-18 18:00:56,656 INFO  [        ome.services.util.ServiceHandler] (3-thread-5)  Executor.doWork -- ome.services.blitz.repo.ScriptRepositoryI.getDescription(51)
2011-09-18 18:00:56,656 INFO  [        ome.services.util.ServiceHandler] (3-thread-4)  Rslt:   ome.model.core.OriginalFile:Id_13
2011-09-18 18:00:56,656 INFO  [        ome.services.util.ServiceHandler] (3-thread-5)  Args:   [null, ome.tools.spring.InternalServiceFactory@24b36348]
2011-09-18 18:00:56,657 INFO  [        ome.services.util.ServiceHandler] (3-thread-4)  Executor.doWork -- ome.services.blitz.repo.LegacyRepositoryI.getDescription(13)
2011-09-18 18:00:56,657 INFO  [        ome.services.util.ServiceHandler] (3-thread-4)  Args:   [null, ome.tools.spring.InternalServiceFactory@3462a001]
2011-09-18 18:00:56,658 INFO  [         ome.security.basic.EventHandler] (3-thread-5)  Auth:   user=0,group=0,event=null(Internal),sess=748477e8-437c-4d44-8977-2f7362391cf1
2011-09-18 18:00:56,658 INFO  [         ome.security.basic.EventHandler] (3-thread-4)  Auth:   user=0,group=0,event=null(Internal),sess=748477e8-437c-4d44-8977-2f7362391cf1
2011-09-18 18:00:56,665 INFO  [                 org.perf4j.TimingLogger] (3-thread-5) start[1316383256656] time[9] tag[omero.call.success.ome.services.blitz.repo.AbstractRepositoryI$1.doWork]
2011-09-18 18:00:56,666 INFO  [        ome.services.util.ServiceHandler] (3-thread-5)  Rslt:   ome.model.core.OriginalFile:Id_51
2011-09-18 18:00:56,667 INFO  [                 org.perf4j.TimingLogger] (3-thread-4) start[1316383256657] time[10] tag[omero.call.success.ome.services.blitz.repo.AbstractRepositoryI$1.doWork]
2011-09-18 18:00:56,667 INFO  [        ome.services.util.ServiceHandler] (3-thread-4)  Rslt:   ome.model.core.OriginalFile:Id_13
2011-09-18 18:01:06,253 INFO  [        ome.services.util.ServiceHandler] (l.Server-6)  Executor.doWork -- ome.services.sessions.SessionManagerImpl.createSession
2011-09-18 18:01:06,254 INFO  [        ome.services.util.ServiceHandler] (l.Server-6)  Args:   [null, ome.tools.spring.InternalServiceFactory@f8a35a2]
2011-09-18 18:01:06,264 INFO  [         ome.security.basic.EventHandler] (l.Server-6)  Auth:   user=0,group=0,event=710(Sessions),sess=748477e8-437c-4d44-8977-2f7362391cf1
2011-09-18 18:01:06,292 INFO  [       ome.security.basic.CurrentDetails] (l.Server-6) Adding log:INSERT,class ome.model.meta.Session,1483
2011-09-18 18:01:06,390 INFO  [                 org.perf4j.TimingLogger] (l.Server-6) start[1316383266254] time[136] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$2.doWork]
2011-09-18 18:01:06,391 INFO  [        ome.services.util.ServiceHandler] (l.Server-6)  Rslt:   (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, [0, 1], ... 4 more)
2011-09-18 18:01:06,395 INFO  [ ome.services.blitz.fire.SessionManagerI] (l.Server-6) Created session ServiceFactoryI(session-047e0959-4c24-4075-b1c5-c8fa797da6a0/337e5ee6-833e-41ae-9a9c-9d39f9255dea) for user root (agent=null)
2011-09-18 18:01:06,399 INFO  [    ome.services.blitz.util.CheckAllJobs] (l.Server-4) Received 0 job(s)
2011-09-18 18:01:06,406 INFO  [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-0) Added servant to adapter: 337e5ee6-833e-41ae-9a9c-9d39f9255dea/047e0959-4c24-4075-b1c5-c8fa797da6a0omero.grid.SharedResources(omero.grid._SharedResourcesTie@46d91f62)
2011-09-18 18:03:00,017 INFO  [ ome.services.blitz.fire.SessionManagerI] (3-thread-1) Performing requestHeartbeats
2011-09-18 18:06:00,013 INFO  [ ome.services.blitz.fire.SessionManagerI] (3-thread-4) Performing requestHeartbeats


I tried to change my omero.web port to the one in lsof, and it didn't work.

Could you tell me what I have done wrong?

Thank you.
Ahmed
 
Posts: 2
Joined: Sun Sep 18, 2011 9:52 pm

Re: Error: Server is not responding, please contact administ

Postby jmoore » Mon Sep 19, 2011 7:28 am

The output from your command:
Code: Select all
Appended omero.port=54064 to ./etc/ice.config
No values found for 4061
No values found for 4063
No values found for 4064

would seem to say that you had tried multiple times to change the ports. Is that right? If so, you'll need to either figure out which one you changed it to first (which should be clear from etc/ice.config) or deploy from a clean unzipped version of OMERO.

What's happened is that the ports were modified by /bin/omero admin ports, and when you then tried to set them again, the original values (4061, 4063, 4064) couldn't be found.

Here are the steps I would take to clean up the existing unzipped version:
  • Figure out which prefix you used first. I'll assume "1".
  • killall icegridnode # Completely shutdown any OMERO instances you may have running.
  • bin/omero admin ports --revert --prefix=1
  • bin/omero admin ports --prefix=5
  • bin/omero admin start

In general, don't use bin/omero admin ports while the server is running because you may not be able to contact it further for shutting down.

Hope that helps!
~Josh
User avatar
jmoore
Site Admin
 
Posts: 1591
Joined: Fri May 22, 2009 1:29 pm
Location: Germany

Re: Error: Server is not responding, please contact administ

Postby Ahmed » Wed Sep 21, 2011 6:50 am

:)


Thank you.
This really helped me.

My server works fine without any issues. Thank you again
Ahmed
 
Posts: 2
Joined: Sun Sep 18, 2011 9:52 pm


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