I am running FreeBSD 10.2 and am attempting to install Omero Server 5.2.5-ice36-b28. My 'admin diagnostics' output is below. I have no idea whether I am very close, or quite a ways off at this point. I am not expecting any web services to function, as I have not yet gone through any of http://www.openmicroscopy.org/site/support/omero5.2/sysadmins/unix/install-web.html.
Is it reasonable to expect 'omero admin start' to work even though the Omero.web components are not yet ready? I'm just looking for some metric of success on the work done so far, so that I can troubleshoot what I've got, and then build from there.
The most obvious point is that icegridnode is not running. I don't see any obvious script installed that would start the icegridnode process. At least, running 'icegridamin -s &' didn't do it. Clues appreciated.
Thank you for any suggestions, including pointers to documentation that I should have read, or requests to please post this or that.
Jim
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omero : 14:55:14 /home/omero/omero> OMERO.server/bin/omero admin diagnostics
================================================================================
OMERO Diagnostics 5.2.5-ice36-b28
================================================================================
Commands: java -version 1.8.0 (/usr/local/bin/java)
Commands: python -V 2.7.12 (/usr/local/bin/python)
Commands: icegridnode --version 3.6.2 (/usr/local/bin/icegridnode)
Commands: icegridadmin --version 3.6.2 (/usr/local/bin/icegridadmin)
Commands: psql --version 9.4.9 (/usr/local/bin/psql)
Server: icegridnode not started
Log dir: /usr/home/omero/omero/OMERO.server/var/log exists
Log files: Blitz-0.log 102.0 KB errors=52 warnings=0
Log files: DropBox.log 1.0 KB errors=6 warnings=0
Log files: FileServer.log 0.0 KB
Log files: Indexer-0.log 103.0 KB errors=70 warnings=0
Log files: MonitorServer.log 0.0 KB
Log files: OMEROweb.log n/a
Log files: PixelData-0.log 103.0 KB errors=70 warnings=0
Log files: Processor-0.log 30.0 KB errors=16 warnings=8
Log files: Tables-0.log n/a
Log files: TestDropBox.log n/a
Log files: master.err 3.0 KB errors=2 warnings=6
Log files: master.out 0.0 KB
Log files: Total size 0.35 MB
Environment:OMERO_HOME=(unset)
Environment:OMERO_NODE=(unset)
Environment:OMERO_MASTER=(unset)
Environment:OMERO_USERDIR=(unset)
Environment:OMERO_TMPDIR=(unset)
Environment:PATH=/bin:/sbin:/usr/bin:/usr/sbin:/usr/X11R6/bin:/usr/local/bin:/usr/local/sbin:/home/omero/bin
Environment:PYTHONPATH=(unset)
Environment:ICE_HOME=(unset)
Environment:LD_LIBRARY_PATH=(unset)
Environment:DYLD_LIBRARY_PATH=(unset)
Cannot list deployed applications.
OMERO data dir:'/OMERO' Exists? True Is writable? True
OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
JVM settings: Blitz-${index} -Xmx3860m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
JVM settings: Indexer-${index} -Xmx2573m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
JVM settings: PixelData-${index} -Xmx3860m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
JVM settings: Repository-${index} -Xmx2573m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
OMERO.web status... [ERROR] You are deploying OMERO.web using Apache and mod_wsgi. OMERO.web does not provide any management for the daemon process which communicates with Apache child processes using UNIX sockets to handle a request. Please check Apache directly.
Django version: 1.8.13
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omero : 15:19:52 /home/omero/omero> time OMERO.server/bin/omero admin start
No descriptor given. Using etc/grid/default.xml
Waiting on startup. Use CTRL-C to exit
.............................
Failed to startup some components after 300 seconds
Calling "stop" on remaining components
Waiting on shutdown. Use CTRL-C to exit
......
real 6m7.791s
user 0m11.724s
sys 0m4.238s
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omero : 15:29:29 /home/omero/omero> sockstat
USER COMMAND PID FD PROTO LOCAL ADDRESS FOREIGN ADDRESS
pgsql postgres 67182 3 dgram -> /var/run/log
pgsql postgres 67182 8 udp4 10.160.92.49:38228 10.160.92.49:38228
pgsql postgres 67181 3 dgram -> /var/run/log
pgsql postgres 67181 8 udp4 10.160.92.49:38228 10.160.92.49:38228
pgsql postgres 67180 3 dgram -> /var/run/log
pgsql postgres 67180 8 udp4 10.160.92.49:38228 10.160.92.49:38228
pgsql postgres 67179 3 dgram -> /var/run/log
pgsql postgres 67179 8 udp4 10.160.92.49:38228 10.160.92.49:38228
pgsql postgres 67178 3 dgram -> /var/run/log
pgsql postgres 67178 8 udp4 10.160.92.49:38228 10.160.92.49:38228
pgsql postgres 67176 3 dgram -> /var/run/log
pgsql postgres 67176 4 tcp4 10.160.92.49:5432 *:*
pgsql postgres 67176 5 stream /tmp/.s.PGSQL.5432
pgsql postgres 67176 8 udp4 10.160.92.49:38228 10.160.92.49:38228
root cron 38308 4 dgram -> /var/run/logpriv
smmsp sendmail 38304 3 dgram -> /var/run/log
root sendmail 38301 3 dgram -> /var/run/logpriv
root sendmail 38301 4 tcp4 10.160.92.49:25 *:*
root syslogd 38245 4 dgram /var/run/log
root syslogd 38245 5 dgram /var/run/logpriv
root syslogd 38245 6 udp4 10.160.92.49:514 *:*
