Open Microscopy Environment

I just installed the OMERO server (Beta 4.0.3) on my Macbook (OSX 10.5.7) and everything proceeds without a hitch (Ice 3.3.1, Java SDK 1.5, PostgreSQL 8.4, Python 2.5). I get no errors create databases or anything. However, when I get to the last part of the installation instructions (where I start the server):

Code: Select all

bin/omero admin start

it aborts after 5 minutes of trying to start.

Waiting on startup. Use CTRL-C to exit
.............................Failed to startup after 5 minutes

I have no idea what the problem is. Here is the output of my master.err file after a single try of starting the server immediately after a fresh install of Omero and Ice/Java/PostgreSQL:

Code: Select all

08/06/09 15:20:00.724 OMERO.Glacier2: warning: unable to contact permissions verifier `BlitzVerifier@BlitzAdapters'
Reference.cpp:1546: Ice::NoEndpointException:
no suitable endpoint available for proxy `BlitzVerifier -t @ BlitzAdapters'
08/06/09 15:20:00.726 OMERO.Glacier2: warning: unable to contact session manager `BlitzManager@BlitzAdapters'
Reference.cpp:1546: Ice::NoEndpointException:
no suitable endpoint available for proxy `BlitzManager -t @ BlitzAdapters'
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}
Traceback (most recent call last):
  File "/Library/Ice-3.3.1/python/Ice.py", line 766, in main
    status = self.run(args)
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 42, in run
    sf = self.getOmeroServiceFactory()
  File "/Users/nperry/Desktop/omero_dist/lib/python/fsDropBox.py", line 133, in getOmeroServiceFactory
    raise Exception(excpt)
Exception: exception ::Ice::NoEndpointException
{
    proxy = BlitzManager -t @ BlitzAdapters
}

Anyone know how to help?

The Omero server times out (5 minutes) when there is a error in the setup. So far this has happened to me for three different errors.
• When the Omero password does not match the Omero postgres password.
• When the Omero repository folder name is not "OMERO".
• When the Postgres Omero database tables are missing.

1. I thought this might be the problem the first time I installed. So I wiped everything, and did this new second install. This time I used the same password (and username if prompted) for both PostgreSQL and Omero whenever I was asked for a UN/PW. So I don't think this can be the problem.

2. If you are referring to the binary repository, I set it as /OMERO.

3. Here are the databases in PostgreSQL (I think...):

Code: Select all

nperry@Gypsophile:~> /Library/PostgreSQL/8.4/bin/psql -h localhost -U omero -l
Password for user omero:
                              List of databases
   Name    |  Owner   | Encoding | Collation | Ctype |   Access privileges   
-----------+----------+----------+-----------+-------+-----------------------
omero     | omero    | UTF8     | C         | C     |
postgres  | postgres | UTF8     | C         | C     |
template0 | postgres | UTF8     | C         | C     | =c/postgres
                                                     : postgres=CTc/postgres
template1 | postgres | UTF8     | C         | C     | =c/postgres
                                                     : postgres=CTc/postgres
(4 rows)


If this is not what you are referring to, then this part of the installation might be:

Code: Select all

$ cd ~/Desktop/omero
$ bin/omero db script
Please enter omero.db.version [OMERO4]:
Please enter omero.db.patch [0]:
Please enter password for new OMERO root user:
Please re-enter password for new OMERO root user:
Saving to /home/omero/Desktop/omero/OMERO4__0.sql
$ psql -h localhost -U omero omero < OMERO4__0.s

I just hit enter for version and path without entering anything (I figured that's how I triggered the defaults), then entered the PW. Following that, I ran the last line of that code and got a LOT of output. Since nothing is working anyway I tried to enter the last line of code again to reproduce my results from last time to print for you here, but instead I got a huge list of errors (probably because I already did this step and configured the OMERO database...). So, I googled around and found out how to print the PostgreSQL tables out. The ones in the omero DB are below (just the first few since there are a lot). Also, hopefully rerunning the above code didn't screw things up!

Code: Select all

omero-> \dt
                    List of relations
Schema |              Name               | Type  | Owner
--------+---------------------------------+-------+-------
public | acquisitionmode                 | table | omero
public | annotation                      | table | omero
public | annotationannotationlink        | table | omero
public | arc                             | table | omero
public | arctype                         | table | omero
public | binning                         | table | omero
public | channel                         | table | omero
public | channelannotationlink           | table | omero
public | channelbinding                  | table | omero
public | codomainmapcontext              | table | omero
public | configuration                   | table | omero
public | contrastmethod                  | table | omero
public | contraststretchingcontext       | table | omero
public | correction                      | table | omero
public | dataset                         | table | omero
public | datasetannotationlink           | table | omero
public | datasetimagelink                | table | omero
public | dbpatch                         | table | omero
public | detector                        | table | omero
public | detectorsettings                | table | omero
public | detectortype                    | table | omero
public | dichroic                        | table | omero
public | dimensionorder                  | table | omero
public | event                           | table | omero
public | eventlog                        | table | omero
public | eventtype                       | table | omero
public | experiment                      | table | omero

@nperry

Can you paste in the contents from Blitz-0.log, while the FS log is useful, the Blitz-0.log is really what we need to see to help you out.

Here is the contents of that log:

Code: Select all

2009-08-06 15:19:55,069 INFO  [                ome.services.blitz.Entry] (      main) Creating OMERO.blitz. Please wait...
2009-08-06 15:19:59,486 INFO  [ng.ShutdownSafeEhcacheManagerFactoryBean] (      main) Initializing EHCache CacheManager
2009-08-06 15:19:59,667 INFO  [ome.services.db.SelfCorrectingDataSource] (      main) Found location in errorTimes: -1
2009-08-06 15:19:59,667 INFO  [ome.services.db.SelfCorrectingDataSource] (      main) Removing 0 from errorTimes
2009-08-06 15:19:59,667 WARN  [ome.services.db.SelfCorrectingDataSource] (      main) Registering error with list: Current size: 0
2009-08-06 15:19:59,667 INFO  [ome.services.db.SelfCorrectingDataSource] (      main) Sleeping for 0 then retry: 1
2009-08-06 15:19:59,670 INFO  [ome.services.db.SelfCorrectingDataSource] (      main) Found location in errorTimes: -1
2009-08-06 15:19:59,670 INFO  [ome.services.db.SelfCorrectingDataSource] (      main) Removing 0 from errorTimes
2009-08-06 15:19:59,670 WARN  [ome.services.db.SelfCorrectingDataSource] (      main) Registering error with list: Current size: 1
2009-08-06 15:19:59,670 INFO  [ome.services.db.SelfCorrectingDataSource] (      main) Sleeping for 1000 then retry: 2
2009-08-06 15:20:00,673 INFO  [ome.services.db.SelfCorrectingDataSource] (      main) Found location in errorTimes: -1
2009-08-06 15:20:00,673 INFO  [ome.services.db.SelfCorrectingDataSource] (      main) Removing 0 from errorTimes
2009-08-06 15:20:00,673 WARN  [ome.services.db.SelfCorrectingDataSource] (      main) Registering error with list: Current size: 2
2009-08-06 15:20:00,674 ERROR [ome.services.db.SelfCorrectingDataSource] (      main) Failed to acquire connection after retries=3
java.sql.SQLException: unable to get a connection from pool of a PoolingDataSource containing an XAPool of resource 0b1b8a72-7af7-46e7-81bf-fa6091760473 with 0 connection(s) (0 still available)
   at bitronix.tm.resource.jdbc.PoolingDataSource.getConnection(PoolingDataSource.java:109)
   at org.springframework.jdbc.datasource.DelegatingDataSource.getConnection(DelegatingDataSource.java:84)
   at ome.services.db.SelfCorrectingDataSource.call(SelfCorrectingDataSource.java:102)
   at ome.services.db.SelfCorrectingDataSource.callWithRetries(SelfCorrectingDataSource.java:75)
   at ome.services.db.SelfCorrectingDataSource.getConnection(SelfCorrectingDataSource.java:59)
   at org.springframework.jdbc.datasource.LazyConnectionDataSourceProxy.afterPropertiesSet(LazyConnectionDataSourceProxy.java:163)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1368)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1334)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:473)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
   at java.security.AccessController.doPrivileged(Native Method)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
   at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
   at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
   at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1245)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
   at java.security.AccessController.doPrivileged(Native Method)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
   at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
   at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
   at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1245)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
   at java.security.AccessController.doPrivileged(Native Method)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
   at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
   at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
   at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
   at org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:495)
   at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:162)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
   at java.security.AccessController.doPrivileged(Native Method)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
   at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
   at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
   at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1245)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
   at java.security.AccessController.doPrivileged(Native Method)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
   at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
   at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
   at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
   at org.springframework.beans.factory.support.DefaultListableBeanFactory.getBeansOfType(DefaultListableBeanFactory.java:308)
   at org.springframework.context.support.AbstractApplicationContext.getBeansOfType(AbstractApplicationContext.java:948)
   at org.springframework.context.support.AbstractApplicationContext.registerListeners(AbstractApplicationContext.java:702)
   at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:378)
   at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139)
   at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:105)
   at ome.system.OmeroContext.<init>(OmeroContext.java:98)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:494)
   at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:100)
   at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:87)
   at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:248)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
   at java.security.AccessController.doPrivileged(Native Method)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
   at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
   at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
   at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
   at org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:479)
   at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:162)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
   at java.security.AccessController.doPrivileged(Native Method)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
   at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
   at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
   at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:168)
   at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:885)
   at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:397)
   at ome.system.OmeroContext.getInstance(OmeroContext.java:203)
   at ome.services.blitz.Entry.start(Entry.java:168)
   at ome.services.blitz.Entry.main(Entry.java:119)
Caused by: java.sql.SQLException: unable to connect to non-XA resource org.postgresql.Driver
   at bitronix.tm.resource.jdbc.lrc.LrcXADataSource.getXAConnection(LrcXADataSource.java:82)
   at bitronix.tm.resource.jdbc.PoolingDataSource.createPooledConnection(PoolingDataSource.java:167)
   at bitronix.tm.resource.common.XAPool.createPooledObject(XAPool.java:200)
   at bitronix.tm.resource.common.XAPool.grow(XAPool.java:310)
   at bitronix.tm.resource.common.XAPool.getInPool(XAPool.java:289)
   at bitronix.tm.resource.common.XAPool.getConnectionHandle(XAPool.java:72)
   at bitronix.tm.resource.common.XAPool.getConnectionHandle(XAPool.java:58)
   at bitronix.tm.resource.jdbc.PoolingDataSource.getConnection(PoolingDataSource.java:105)
   ... 115 more
Caused by: org.postgresql.util.PSQLException: FATAL: password authentication failed for user "nick"
   at org.postgresql.core.v3.ConnectionFactoryImpl.doAuthentication(ConnectionFactoryImpl.java:276)
   at org.postgresql.core.v3.ConnectionFactoryImpl.openConnectionImpl(ConnectionFactoryImpl.java:95)
   at org.postgresql.core.ConnectionFactory.openConnection(ConnectionFactory.java:66)
   at org.postgresql.jdbc2.AbstractJdbc2Connection.<init>(AbstractJdbc2Connection.java:124)
   at org.postgresql.jdbc3.AbstractJdbc3Connection.<init>(AbstractJdbc3Connection.java:30)
   at org.postgresql.jdbc3.Jdbc3Connection.<init>(Jdbc3Connection.java:24)
   at org.postgresql.Driver.makeConnection(Driver.java:386)
   at org.postgresql.Driver.connect(Driver.java:260)
   at bitronix.tm.resource.jdbc.lrc.LrcXADataSource.getXAConnection(LrcXADataSource.java:79)
   ... 122 more
2009-08-06 15:20:00,680 INFO  [ng.ShutdownSafeEhcacheManagerFactoryBean] (      main) Shutting down EHCache CacheManager
2009-08-06 15:20:00,681 ERROR [                ome.services.blitz.Entry] (      main) Error on startup.
org.springframework.beans.factory.access.BootstrapException: Unable to return specified BeanFactory instance: factory key [OMERO.blitz], from group with resource name [classpath*:beanRefContext.xml]; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'OMERO.blitz' defined in URL [jar:file:/Users/nperry/Desktop/omero_dist/lib/server/blitz.jar!/beanRefContext.xml]: Cannot resolve reference to bean 'ome.server' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'ome.server' defined in URL [jar:file:/Users/nperry/Desktop/omero_dist/lib/server/server.jar!/beanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'sessionManager' defined in class path resource [ome/services/sec-primitives.xml]: Cannot resolve reference to bean 'executor' while setting bean property 'executor'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'executor' defined in class path resource [ome/services/services.xml]: Cannot resolve reference to bean 'sessionFactory' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'sessionFactory' defined in class path resource [ome/services/hibernate.xml]: Cannot resolve reference to bean 'dataSource' while setting bean property 'dataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'txAwareDataSource' defined in class path resource [ome/services/datalayer.xml]: Cannot resolve reference to bean 'lazyDataSource' while setting bean property 'targetDataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'lazyDataSource' defined in class path resource [ome/services/datalayer.xml]: Invocation of init method failed; nested exception is ome.conditions.DatabaseBusyException: Cannot acquire connection
   at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:410)
   at ome.system.OmeroContext.getInstance(OmeroContext.java:203)
   at ome.services.blitz.Entry.start(Entry.java:168)
   at ome.services.blitz.Entry.main(Entry.java:119)
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'OMERO.blitz' defined in URL [jar:file:/Users/nperry/Desktop/omero_dist/lib/server/blitz.jar!/beanRefContext.xml]: Cannot resolve reference to bean 'ome.server' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'ome.server' defined in URL [jar:file:/Users/nperry/Desktop/omero_dist/lib/server/server.jar!/beanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'sessionManager' defined in class path resource [ome/services/sec-primitives.xml]: Cannot resolve reference to bean 'executor' while setting bean property 'executor'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'executor' defined in class path resource [ome/services/services.xml]: Cannot resolve reference to bean 'sessionFactory' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'sessionFactory' defined in class path resource [ome/services/hibernate.xml]: Cannot resolve reference to bean 'dataSource' while setting bean property 'dataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'txAwareDataSource' defined in class path resource [ome/services/datalayer.xml]: Cannot resolve reference to bean 'lazyDataSource' while setting bean property 'targetDataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'lazyDataSource' defined in class path resource [ome/services/datalayer.xml]: Invocation of init method failed; nested exception is ome.conditions.DatabaseBusyException: Cannot acquire connection
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:275)
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
   at org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:479)
   at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:162)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
   at java.security.AccessController.doPrivileged(Native Method)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
   at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
   at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
   at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:168)
   at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:885)
   at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:397)
   ... 3 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'ome.server' defined in URL [jar:file:/Users/nperry/Desktop/omero_dist/lib/server/server.jar!/beanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'sessionManager' defined in class path resource [ome/services/sec-primitives.xml]: Cannot resolve reference to bean 'executor' while setting bean property 'executor'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'executor' defined in class path resource [ome/services/services.xml]: Cannot resolve reference to bean 'sessionFactory' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'sessionFactory' defined in class path resource [ome/services/hibernate.xml]: Cannot resolve reference to bean 'dataSource' while setting bean property 'dataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'txAwareDataSource' defined in class path resource [ome/services/datalayer.xml]: Cannot resolve reference to bean 'lazyDataSource' while setting bean property 'targetDataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'lazyDataSource' defined in class path resource [ome/services/datalayer.xml]: Invocation of init method failed; nested exception is ome.conditions.DatabaseBusyException: Cannot acquire connection
   at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:254)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
   at java.security.AccessController.doPrivileged(Native Method)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
   at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
   at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
   at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
   ... 19 more
Caused by: org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'sessionManager' defined in class path resource [ome/services/sec-primitives.xml]: Cannot resolve reference to bean 'executor' while setting bean property 'executor'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'executor' defined in class path resource [ome/services/services.xml]: Cannot resolve reference to bean 'sessionFactory' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'sessionFactory' defined in class path resource [ome/services/hibernate.xml]: Cannot resolve reference to bean 'dataSource' while setting bean property 'dataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'txAwareDataSource' defined in class path resource [ome/services/datalayer.xml]: Cannot resolve reference to bean 'lazyDataSource' while setting bean property 'targetDataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'lazyDataSource' defined in class path resource [ome/services/datalayer.xml]: Invocation of init method failed; nested exception is ome.conditions.DatabaseBusyException: Cannot acquire connection
   at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:115)
   at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:87)
   at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:248)
   ... 31 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'sessionManager' defined in class path resource [ome/services/sec-primitives.xml]: Cannot resolve reference to bean 'executor' while setting bean property 'executor'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'executor' defined in class path resource [ome/services/services.xml]: Cannot resolve reference to bean 'sessionFactory' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'sessionFactory' defined in class path resource [ome/services/hibernate.xml]: Cannot resolve reference to bean 'dataSource' while setting bean property 'dataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'txAwareDataSource' defined in class path resource [ome/services/datalayer.xml]: Cannot resolve reference to bean 'lazyDataSource' while setting bean property 'targetDataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'lazyDataSource' defined in class path resource [ome/services/datalayer.xml]: Invocation of init method failed; nested exception is ome.conditions.DatabaseBusyException: Cannot acquire connection
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:275)
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1245)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
   at java.security.AccessController.doPrivileged(Native Method)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
   at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
   at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
   at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
   at org.springframework.beans.factory.support.DefaultListableBeanFactory.getBeansOfType(DefaultListableBeanFactory.java:308)
   at org.springframework.context.support.AbstractApplicationContext.getBeansOfType(AbstractApplicationContext.java:948)
   at org.springframework.context.support.AbstractApplicationContext.registerListeners(AbstractApplicationContext.java:702)
   at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:378)
   at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139)
   at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:105)
   at ome.system.OmeroContext.<init>(OmeroContext.java:98)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:494)
   at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:100)
   ... 33 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'executor' defined in class path resource [ome/services/services.xml]: Cannot resolve reference to bean 'sessionFactory' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'sessionFactory' defined in class path resource [ome/services/hibernate.xml]: Cannot resolve reference to bean 'dataSource' while setting bean property 'dataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'txAwareDataSource' defined in class path resource [ome/services/datalayer.xml]: Cannot resolve reference to bean 'lazyDataSource' while setting bean property 'targetDataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'lazyDataSource' defined in class path resource [ome/services/datalayer.xml]: Invocation of init method failed; nested exception is ome.conditions.DatabaseBusyException: Cannot acquire connection
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:275)
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
   at org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:495)
   at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:162)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
   at java.security.AccessController.doPrivileged(Native Method)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
   at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
   at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
   at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
   ... 57 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'sessionFactory' defined in class path resource [ome/services/hibernate.xml]: Cannot resolve reference to bean 'dataSource' while setting bean property 'dataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'txAwareDataSource' defined in class path resource [ome/services/datalayer.xml]: Cannot resolve reference to bean 'lazyDataSource' while setting bean property 'targetDataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'lazyDataSource' defined in class path resource [ome/services/datalayer.xml]: Invocation of init method failed; nested exception is ome.conditions.DatabaseBusyException: Cannot acquire connection
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:275)
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1245)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
   at java.security.AccessController.doPrivileged(Native Method)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
   at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
   at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
   at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
   ... 72 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'txAwareDataSource' defined in class path resource [ome/services/datalayer.xml]: Cannot resolve reference to bean 'lazyDataSource' while setting bean property 'targetDataSource'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'lazyDataSource' defined in class path resource [ome/services/datalayer.xml]: Invocation of init method failed; nested exception is ome.conditions.DatabaseBusyException: Cannot acquire connection
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:275)
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1245)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
   at java.security.AccessController.doPrivileged(Native Method)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
   at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
   at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
   at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
   ... 85 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'lazyDataSource' defined in class path resource [ome/services/datalayer.xml]: Invocation of init method failed; nested exception is ome.conditions.DatabaseBusyException: Cannot acquire connection
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1337)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:473)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
   at java.security.AccessController.doPrivileged(Native Method)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
   at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
   at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
   at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
   at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
   ... 98 more
Caused by: ome.conditions.DatabaseBusyException: Cannot acquire connection
   at ome.services.db.SelfCorrectingDataSource.callWithRetries(SelfCorrectingDataSource.java:91)
   at ome.services.db.SelfCorrectingDataSource.getConnection(SelfCorrectingDataSource.java:59)
   at org.springframework.jdbc.datasource.LazyConnectionDataSourceProxy.afterPropertiesSet(LazyConnectionDataSourceProxy.java:163)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1368)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1334)
   ... 108 more


Code: Select all

...
    Caused by: org.postgresql.util.PSQLException: FATAL: password authentication failed for user "nick"
       at org.postgresql.core.v3.ConnectionFactoryImpl.doAuthentication(ConnectionFactoryImpl.java:276)
       at org.postgresql.core.v3.ConnectionFactoryImpl.openConnectionImpl(ConnectionFactoryImpl.java:95)
       at org.postgresql.core.ConnectionFactory.openConnection(ConnectionFactory.java:66)
       at org.postgresql.jdbc2.AbstractJdbc2Connection.<init>(AbstractJdbc2Connection.java:124)
       at org.postgresql.jdbc3.AbstractJdbc3Connection.<init>(AbstractJdbc3Connection.java:30)
       at org.postgresql.jdbc3.Jdbc3Connection.<init>(Jdbc3Connection.java:24)
       at org.postgresql.Driver.makeConnection(Driver.java:386)
       at org.postgresql.Driver.connect(Driver.java:260)
       at bitronix.tm.resource.jdbc.lrc.LrcXADataSource.getXAConnection(LrcXADataSource.java:79)
       ... 122 more


Can you connect to the OMERO database with "nick" and whatever password you have configured? The values OMERO is using will be visible via bin/omero config get.

Sorry, I'm not sure I understand. Do you mean can I connect to the PostgreSQL 'omero' database with the username 'nick' and my password? And then compare this with what OMERO is using in that config file?

OMERO is using the username "nick" but is clearly not able to connect with the password that is configured. You can see what's configured via bin/omero config get and you need to check you can actually connect with those values.

ah, interesting. OMERO seems to have the UN/PW from my LAST installation. Apparently I failed to uninstall it correctly. Let me try fixing these...

wow it totally works now, thanks for the help!