Open Microscopy Environment

Posted: **Thu Jun 10, 2010 11:08 am**

I have some Problems to start the Omero-Server.
It gives me a message like that:

~/Desktop/omero$ bin/omero admin start

No descriptor given. Using etc/grid/default.xml
Waiting on startup. Use CTRL-C to exit
.............................Failed to startup after 5 minutes

And here is the result of the diagnostic file:

~/Desktop/omero$ bin/omero admin diagnostics

================================================================================
OMERO Diagnostics Beta-4.1.1-r5927-b91
================================================================================

Commands: java -version 1.6.0 (/usr/bin/java)
Commands: python -V 2.6.5 (/usr/bin/python)
Commands: icegridnode --version 3.3.1 (/usr/bin/icegridnode)
Commands: icegridadmin --version 3.3.1 (/usr/bin/icegridadmin)
Commands: psql --version 8.4.4 (/usr/bin/psql)

Server: icegridnode running
Server: Blitz-0 inactive (disabled)
Server: DropBox inactive (disabled)
Server: FSServer active (pid = 11207, enabled)
Server: Indexer-0 inactive (disabled)
Server: OMERO.Glacier2 active (pid = 11211, enabled)
Server: OMERO.IceStorm active (pid = 11213, enabled)
Server: Processor-0 activating (enabled)
Server: Tables-0 inactive (disabled)
Server: TestDropBox inactive (enabled)
Server: Web inactive (enabled)

Log dir: /home/~/Desktop/omero/var/log exists

Log files: Blitz-0.log 174.0 KB errors=8 warnings=16
Log files: DropBox.log 5.0 KB errors=8 warnings=4
Log files: FSServer.log 1.0 KB
Log files: Indexer-0.log 149.0 KB errors=8 warnings=16
Log files: OMEROweb.log 0.0 KB
Log files: OMEROweb.log.2010-06-10 0.0 KB
Log files: Processor-0.log 532.0 KB errors=143 warnings=1001
Log files: Tables-0.log n/a
Log files: TestDropBox.log n/a
Log files: master.err 10.0 KB errors=0 warnings=8
Log files: master.out 0.0 KB
Log files: Total size 0.87 MB

I can't find a solution .

Best regard
Ivo

Posted: **Thu Jun 10, 2010 11:47 am**

Hi Ivo,

my guess would be that something went awry during the configuration step or that your postgres is not reachable by the OMERO server.

What configuration values did you enter? If none, can you reach your database with:

Code: Select all: psql -h localhost -U omero omero -c "select * from dbpatch"

Does the /OMERO/ directory exist (or whatever value you configured for omero.data.dir)? Is it writeable by the user who started the server?

Could you attach your log files here to help us pinpoint the problem? Most important is var/log/Blitz-0.log, but feel free to zip them all up.

Cheers,
~Josh.

Posted: **Mon Jun 14, 2010 8:24 am**

Hi jmoore,

Yes i can reach the database wit:

Code: Select all: psql -h localhost -U omero omero -c "select * from dbpatch"

It gives me a message like that:

Thanks,
Ivo

Posted: **Mon Jun 14, 2010 8:25 am**

And here the master.err File:

Thanks,
Ivo

Posted: **Mon Jun 14, 2010 8:29 am**

Code: Select all: ... Caused by: org.postgresql.util.PSQLException: FATAL: password authentication failed for user "me" ...

If you succeeded with a PostgreSQL user "omero" and that user's password then your database properties are incorrect as you can see from the log line I just pasted above. Can you give me the output of the following please?

Code: Select all: bin/omero config get

Posted: **Mon Jun 14, 2010 8:43 am**

Code: Select all: admin10@admin10-desktop:~/Desktop/omero$ bin/omero config get omero.db.name=myDatabase omero.db.pass=TopSecret omero.db.user=me

Posted: **Mon Jun 14, 2010 8:51 am**

You need to set those values correctly and not just copy them from the example in the documentation. Assuming database "omero" username "omero" and password "omero":

Code: Select all: bin/omero config set omero.db.name omero bin/omero config set omero.db.pass omero bin/omero config set omero.db.name omero

These are the defaults, so if you have used "omero" for all of these options you can also:

Code: Select all: bin/omero config drop

This will reset all of those settings to the defaults, which you need not modify unless you are using a different PostgreSQL database name, username or password.

Posted: **Mon Jun 14, 2010 9:17 am**

Now it gives me a massage like that:

Code: Select all: admin10@admin10-desktop:~/Desktop/omero$ bin/omero admin start No descriptor given. Using etc/grid/default.xml Waiting on startup. Use CTRL-C to exit

It doesn't say: "failed to startup after 5 minutes"

Is it already running?

Posted: **Mon Jun 14, 2010 9:25 am**

Yes, it's running.

Posted: **Mon Jun 14, 2010 9:29 am**

O.K. than thanks a lot for the support !!

Thanks,
Ivo

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