GroupSecurityViolation using omero script replace
Posted: Fri Jul 01, 2011 2:15 pmI am trying to replace one of my --official scripts and get a GroupSecurityViolation error.
I am using Omero 4.3.0 with a localhost install. The problem is not anything within my script since the same thing happens when I try to upload then replace one of the scripts that ships with omero:
At current in order to replace the script I have to delete the script from the server scripts directory, restart omero and then upload the script again.
However I can use the replace command if the script is not flagged as official. So is it even possible to use 'replace' on an official script? The ScriptingServicesGuide appears to indicate that it is allowed:
http://trac.openmicroscopy.org.uk/ome/wiki/OmeroPy/ScriptingServiceGuide
Any help would be appreciated.
Thanks,
Alex
I am using Omero 4.3.0 with a localhost install. The problem is not anything within my script since the same thing happens when I try to upload then replace one of the scripts that ships with omero:
[ah403@tallinn ~/omero/scripts] % omero script upload test/Batch_Image_Export.py --official
Using session 773cd9c8-4158-4c98-9556-66c75b9d1ec4 (ah403@localhost:4064). Idle timeout: 10.0 min. Current group: GDSC
Uploaded official script as original file #253
[ah403@tallinn ~/omero/scripts] % omero script replace 253 test/Batch_Image_Export.py
Using session 773cd9c8-4158-4c98-9556-66c75b9d1ec4 (ah403@localhost:4064). Idle timeout: 10.0 min. Current group: GDSC
Traceback (most recent call last):
File "/usr/local/omero_dist/bin/omero", line 123, in <module>
rv = omero.cli.argv()
File "/usr/local/omero_dist/lib/python/omero/cli.py", line 1172, in argv
cli.invoke(args[1:])
File "/usr/local/omero_dist/lib/python/omero/cli.py", line 722, in invoke
stop = self.onecmd(line, previous_args)
File "/usr/local/omero_dist/lib/python/omero/cli.py", line 791, in onecmd
self.execute(line, previous_args)
File "/usr/local/omero_dist/lib/python/omero/cli.py", line 871, in execute
args.func(args)
File "/usr/local/omero_dist/lib/python/omero/plugins/script.py", line 554, in replace
scriptSvc.editScript(ofile, scriptText)
File "/usr/local/omero_dist/lib/python/omero_api_IScript_ice.py", line 126, in editScript
return _M_omero.api.IScript._op_editScript.invoke(self, ((fileObject, scriptText), _ctx))
omero.GroupSecurityViolation: exception ::omero::GroupSecurityViolation
{
serverStackTrace = ome.conditions.GroupSecurityViolation: ome.model.core.OriginalFile:Id_253-modification violates group-security.
at ome.security.basic.BasicACLVoter.throwUpdateViolation(BasicACLVoter.java:167)
at ome.security.CompositeACLVoter.throwUpdateViolation(CompositeACLVoter.java:90)
at ome.security.ACLEventListener.onPreUpdate(ACLEventListener.java:129)
at org.hibernate.action.EntityUpdateAction.preUpdate(EntityUpdateAction.java:236)
at org.hibernate.action.EntityUpdateAction.execute(EntityUpdateAction.java:87)
at org.hibernate.engine.ActionQueue.execute(ActionQueue.java:267)
at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:259)
at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:179)
at org.hibernate.event.def.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:321)
at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:51)
at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1208)
at ome.logic.UpdateImpl.afterUpdate(UpdateImpl.java:294)
at ome.logic.UpdateImpl.doAction(UpdateImpl.java:312)
at ome.logic.UpdateImpl.doAction(UpdateImpl.java:302)
at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:118)
at ome.services.blitz.impl.ScriptI$15.doWork(ScriptI.java:592)
at sun.reflect.GeneratedMethodAccessor229.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:440)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.security.basic.EventHandler.invoke(EventHandler.java:150)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at $Proxy64.doWork(Unknown Source)
at ome.services.util.Executor$Impl.execute(Executor.java:371)
at ome.services.blitz.impl.ScriptI.updateFile(ScriptI.java:585)
at ome.services.blitz.impl.ScriptI.access$500(ScriptI.java:82)
at ome.services.blitz.impl.ScriptI$6.call(ScriptI.java:267)
at ome.services.throttling.Callback2.run(Callback2.java:49)
at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:155)
at ome.services.blitz.impl.ScriptI.editScript_async(ScriptI.java:244)
at omero.api._IScriptTie.editScript_async(_IScriptTie.java:78)
at omero.api._IScriptDisp.___editScript(_IScriptDisp.java:305)
at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:490)
at IceInternal.Incoming.invoke(Incoming.java:159)
at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
at Ice.ConnectionI.message(ConnectionI.java:972)
at IceInternal.ThreadPool.run(ThreadPool.java:577)
at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
serverExceptionClass = ome.conditions.GroupSecurityViolation
message = ome.model.core.OriginalFile:Id_253-modification violates group-security.
}
At current in order to replace the script I have to delete the script from the server scripts directory, restart omero and then upload the script again.
However I can use the replace command if the script is not flagged as official. So is it even possible to use 'replace' on an official script? The ScriptingServicesGuide appears to indicate that it is allowed:
http://trac.openmicroscopy.org.uk/ome/wiki/OmeroPy/ScriptingServiceGuide
Any help would be appreciated.
Thanks,
Alex
