Open Microscopy Environment

Hi everybody,

I finished to install OMERO 5 beta1 following the online tutorial available at https://www.openmicroscopy.org/site/support/omero5/sysadmins/unix/server-install-linux.html on Ubuntu 12.04 LTS and everything went fine.
However, when I tried to not use the web development and integrate the omero web interface into Apache, things didn't work:
I followed the tutorial available here:
http://www.openmicroscopy.org/site/supp ... l-web.html

But my main problem is that after configuring omero we to use fastcgi and started the web server:

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omero config set omero.web.application_server "fastcgi-tcp"
omero web start

I cannot see any omero.fcgi file mention in the /etc/apache2/sites-enabled/99-omero-web.conf generated by running the command

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omero web config apache

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RewriteEngine on
RewriteRule ^/?$ /omero/ [R]

###
### Stanza for OMERO.web created 2014-01-14 13:56:05.893149
###
FastCGIExternalServer "/opt/OMERO/OMERO.server/var/omero.fcgi" -socket "/opt/OMERO/OMERO.server/var/django_fcgi.sock"

<Directory "/opt/OMERO/OMERO.server/var">
    Options -Indexes FollowSymLinks
    Order allow,deny
    Allow from all
</Directory>

<Directory "/opt/OMERO/OMERO.server/lib/python/omeroweb/static">
    Options -Indexes FollowSymLinks
    Order allow,deny
    Allow from all
</Directory>

Alias /static /opt/OMERO/OMERO.server/lib/python/omeroweb/static
Alias /omero "/opt/OMERO/OMERO.server/var/omero.fcgi/"

So when I access to mywebserver.com/omero, I got an error message and the following in the apache.log file:

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[Tue Jan 14 15:35:54 2014] [notice] FastCGI: process manager initialized (pid 5318)
[Tue Jan 14 15:35:54 2014] [notice] Apache/2.2.22 (Ubuntu) mod_fastcgi/mod_fastcgi-SNAP-0910052141 configured -- resuming normal operations
Tue Jan 14 15:36:36 2014] [error] [client 10.35.78.30] (2)No such file or directory: FastCGI: failed to connect to server "/opt/OMERO/OMERO.server/var/omero.fcgi": connect() failed
[Tue Jan 14 15:36:36 2014] [error] [client 10.35.78.30] FastCGI: incomplete headers (0 bytes) received from server "/opt/OMERO/OMERO.server/var/omero.fcgi"

I am probably missing something, but I can't see what.

Any help will be appareciate
Thanks,
Benjamin

Hi Benjamin,

The first thing there is that you have a UNIX socket configuration when you are trying to use TCP.

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omero config set omero.web.application_server "fastcgi-tcp"

FastCGIExternalServer "/opt/OMERO/OMERO.server/var/omero.fcgi" -socket "/opt/OMERO/OMERO.server/var/django_fcgi.sock"


So configuration is definitely mismatched.

I am guessing, it came like this because apache config had been generated before setting "omero.web.application_server" to "fastcgi-tcp". Please either run "omero web config apache" again or just change the following:

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FastCGIExternalServer "/opt/OMERO/OMERO.server/var/omero.fcgi" -host 0.0.0.0:4080

I hope it will help.

Ola

Thanks Ola for your answer, it was exactly the problem, which is solved now...
Thanks again!