Open Microscopy Environment

Posted: **Thu Mar 13, 2014 2:55 pm**

Hi, I just started new install of OMERO server on CentOS 6.2. I followed every step from the server installation doc, and they went smooth. However, in the last thing to start up the server, it failed:

[root@server]# sudo -u omero bin/omero admin start
No descriptor given. Using etc/grid/default.xml
Waiting on startup. Use CTRL-C to exit
.............................
Failed to startup some components after 300 seconds
Calling "stop" on remaining components
Waiting on shutdown. Use CTRL-C to exit
......[root@server]#

The master.err complains about Ice:

-! 03/12/14 12:35:31.031 OMERO.Glacier2: warning: unable to contact permissions verifier `BlitzVerifier@BlitzAdapters'
Reference.cpp:1663: Ice::NoEndpointException:
no suitable endpoint available for proxy `BlitzVerifier -t -e 1.1 @ BlitzAdapters'
-! 03/12/14 12:35:31.032 OMERO.Glacier2: warning: unable to contact session manager `BlitzManager@BlitzAdapters'
Reference.cpp:1663: Ice::NoEndpointException:
no suitable endpoint available for proxy `BlitzManager -t -e 1.1 @ BlitzAdapters'

and the Blitz-0.log file is lengthy with whole bunch of Java exceptions but the key thing (I think) is related to communication with Ice:

2014-03-12 12:35:30,685 ERROR [ ome.services.blitz.Entry] ( main) Error on startup.
org.springframework.beans.factory.access.BootstrapException: Unable to return specified BeanFactory instance: factory key [OMERO.blitz], from group with resource name [classpath*:beanRefContext.xml]; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'OMERO.blitz' defined in URL [jar:file:/usr/local/OMERO.server-5.0.0-ice35-b19/lib/server/blitz.jar!/beanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'omero.rtypes.RTypeObjectFactoryRegistry#0' defined in class path resource [ome/services/objectfactories.xml]: Cannot resolve reference to bean 'Ice.Communicator' while setting bean property 'iceCommunicator'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'configuration' defined in URL [jar:file:/usr/local/OMERO.server-5.0.0-ice35-b19/lib/server/blitz.jar!/ome/services/blitz-config.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.util.BlitzConfiguration]: Constructor threw exception; nested exception is org.springframework.beans.FatalBeanException: Could not find Ice config for object adapter [ BlitzAdapter ]
at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:409) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
at ome.system.OmeroContext.getInstance(OmeroContext.java:203) ~[common.jar:na]
at ome.services.blitz.Entry.start(Entry.java:193) [blitz.jar:na]
at ome.services.blitz.Entry.main(Entry.java:150) [blitz.jar:na]
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'OMERO.blitz' defined in URL [jar:file:/usr/local/OMERO.server-5.0.0-ice35-b19/lib/server/blitz.jar!/beanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'omero.rtypes.RTypeObjectFactoryRegistry#0' defined in class path resource [ome/services/objectfactories.xml]: Cannot resolve reference to bean 'Ice.Communicator' while setting bean property 'iceCommunicator'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'configuration' defined in URL [jar:file:/usr/local/OMERO.server-5.0.0-ice35-b19/lib/server/blitz.jar!/ome/services/blitz-config.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.util.BlitzConfiguration]: Constructor threw exception; nested e
xception is org.springframework.beans.FatalBeanException: Could not find Ice config for object adapter [ BlitzAdapter ]

The Ice is new version of 3.5.1, as seen from diagnostics :

[root@server]# sudo -u omero bin/omero admin diagnostics

================================================================================
OMERO Diagnostics 5.0.0-ice35-b19
================================================================================

Commands: java -version 1.6.0 (/usr/bin/java)
Commands: python -V 2.6.6 (/usr/bin/python)
Commands: icegridnode --version 3.5.1 (/usr/bin/icegridnode)
Commands: icegridadmin --version 3.5.1 (/usr/bin/icegridadmin)
Commands: psql --version 8.4.20 (/usr/bin/psql)

Server: icegridnode not started

Cannot list deployed applications.

Log dir: /usr/local/OMERO.server-5.0.0-ice35-b19/var/log exists

Log files: Blitz-0.log 172.0 KB errors=32 warnings=0
Log files: DropBox.log 6.0 KB errors=8 warnings=4
Log files: FileServer.log 1.0 KB
Log files: Indexer-0.log 17.0 KB errors=4 warnings=8
Log files: MonitorServer.log 1.0 KB
Log files: OMEROweb.log n/a
Log files: PixelData-0.log 20.0 KB errors=4 warnings=8
Log files: Processor-0.log 71.0 KB errors=40 warnings=20
Log files: Tables-0.log 2.0 KB errors=4 warnings=0
Log files: TestDropBox.log n/a
Log files: master.err 2.0 KB errors=2 warnings=8
Log files: master.out 0.0 KB
Log files: Total size 0.30 MB

Environment:OMERO_HOME=(unset)
Environment:OMERO_NODE=(unset)
Environment:OMERO_MASTER=(unset)
Environment:OMERO_TEMPDIR=(unset)
Environment:PATH=/sbin:/bin:/usr/sbin:/usr/bin
Environment:ICE_HOME=(unset)
Environment:LD_LIBRARY_PATH=(unset)
Environment:DYLD_LIBRARY_PATH=(unset)

OMERO data dir: '/OMERO' Exists? True Is writable? True
OMERO temp dir: '/usr/local/omero.server/omero/tmp' Exists? True Is writable? True (Size: 0)
OMERO.web status... [NOT STARTED]

The "unset" OMERO_HOME is bit strange as I did set them via "config set"

<properties id="__ACTIVE__">
<property name="omero.config.profile" value="default"/>
<property name="omero.config.version" value="4.2.1"/>
<property name="omero.db.name" value="omero_db"/>
<property name="omero.db.user" value="omero"/>
<property name="OMERO_HOME" value="/usr/local/omero.server"/>
<property name="ICE_HOME" value="/usr/share/Ice-3.5.1"/>
</properties>

I thought some thing wrong regarding the communication with Ice. But I don't what it is and how to fix it.
I did notice Ice server (icegridnode) started by omero.server starting up. Still, OMERO is not happy with it.

Any hint/thought/comment/..... I have been playing around it for days no luck. Thanks very much.

Posted: **Thu Mar 13, 2014 5:30 pm**

Hi
Could we have a copy of the most recent log files? Blitz-0.log
should be sufficient. You could submit them using the QA
upload page here: http://qa.openmicroscopy.org.uk/qa/upload/

Looking at what you posted, the failure is probably low level.
I will suggest to install 5.0.0 for Ice 3.4 [1] and see if you still have the same issue.

Regards

Jmarie

[1] http://downloads.openmicroscopy.org/ome ... 34-b19.zip

Posted: **Thu Mar 13, 2014 6:41 pm**

Thank you Jmarie.
I have tried 3 times to upload the Blitz-0.log file via QA, still not sure if it got delivered to you or to the forum. I will send it out via email if it did not reach you.

I will try omero for Ice 3.4 in the mean time.
Thank you.

Tom

Posted: **Thu Mar 13, 2014 6:46 pm**

Thanks.
The log file has been uploaded

Jmarie

Posted: **Thu Mar 13, 2014 8:27 pm**

Hi Jmarie,

Your expertise works: once I downgraded to ice 3.4.2, it worked (at least OMERO.server started).

Many thanks,

Tom

Posted: **Thu Mar 13, 2014 8:46 pm**

Hi Tom

That's great.
Jmarie

Posted: **Mon Jun 16, 2014 12:49 pm**

Dear all,

did anybody meanwhile manage to get OMERO 5.0.x running on CentOS 6.x using Ice-3.5.1?

I just gave it another try today with
- OMERO 5.0.1
- CentOS 6.5
- Ice-3.5.1 & db53 (as present in Ice-3.5.1-el6-x86_64-rpm.tar.gz)
but unfortunately the error is still the same:

Code: Select all: -! 06/16/14 11:50:40.078 OMERO.Glacier2: warning: unable to contact permissions verifier `BlitzVerifier@BlitzAdapters' Reference.cpp:1663: Ice::NoEndpointException: no suitable endpoint available for proxy `BlitzVerifier -t -e 1.1 @ BlitzAdapters' -! 06/16/14 11:50:40.079 OMERO.Glacier2: warning: unable to contact session manager `BlitzManager@BlitzAdapters' Reference.cpp:1663: Ice::NoEndpointException: no suitable endpoint available for proxy `BlitzManager -t -e 1.1 @ BlitzAdapters'

Just curious to know if there has been some progress ...
OMERO 5.0.2 with Ice-3.4.2-1 -of course- is fine!

Thanks a lot & best regards,
-Rainer

Posted: **Mon Jun 16, 2014 1:36 pm**

Hi Rainer

OMERO-5.0.x with Ice 3.5.1 definitely runs on CentOS6. We've got an example walkthrough at https://www.openmicroscopy.org/site/sup ... rough.html (the walkthrough is for Ubuntu 14.04 but the equivalent scripts for CentOS6 are linked).

Is there anything in your other logs?

Simon

Posted: **Mon Jun 16, 2014 3:03 pm**

Glad and sad to hear!
Glad, because then it really seems to work. Sad, because then I am apparently doing something wrong

I will add more log info (see below), but I will definitively also give it another try following the instructions you send.
Coming back to you soon.

Thanks a lot,
-Rainer

Processor-0.log

Code: Select all: 2014-06-16 11:11:52,121 INFO [ omero.util.Resources] (Thread-2 ) Halted 2014-06-16 11:50:25,060 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2014-06-16 11:50:25,060 INFO [ omero.util.Server] (MainThread) Waiting 10000 ms on startup 2014-06-16 11:50:35,061 INFO [ omero.util.Server] (MainThread) Starting 2014-06-16 11:50:35,063 INFO [ omero.util.Resources] (Thread-2 ) Starting 2014-06-16 11:50:40,078 INFO [ omero.utils] (MainThread) Failed to get session on attempt 1 2014-06-16 11:50:50,080 INFO [ omero.utils] (MainThread) Failed to get session on attempt 2 2014-06-16 11:51:00,083 INFO [ omero.utils] (MainThread) Failed to get session on attempt 3 2014-06-16 11:51:10,086 INFO [ omero.utils] (MainThread) Failed to get session on attempt 4 2014-06-16 11:51:20,089 INFO [ omero.utils] (MainThread) Failed to get session on attempt 5 2014-06-16 11:51:30,091 INFO [ omero.utils] (MainThread) Failed to get session on attempt 6 2014-06-16 11:51:40,092 WARNI [ omero.utils] (MainThread) Reason: exception ::Ice::NoEndpointException { proxy = BlitzManager -t -e 1.1 @ BlitzAdapters } 2014-06-16 11:51:40,092 ERROR [ omero.util.Server] (MainThread) Failed initialization Traceback (most recent call last): File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 457, in run self.impl = self.impl_class(ctx) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/processor.py", line 732, in __init__ omero.util.Servant.__init__(self, ctx, needs_session = needs_session) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 534, in __init__ self.ctx.newSession() File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 311, in newSession self.session = internal_service_factory(self.communicator, stop_event = self.stop_event) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 194, in internal_service_factory raise excpt NoEndpointException: exception ::Ice::NoEndpointException { proxy = BlitzManager -t -e 1.1 @ BlitzAdapters } 2014-06-16 11:51:40,094 INFO [ omero.util.Server] (MainThread) Cleanup 2014-06-16 11:51:40,094 INFO [ omero.util.Server] (MainThread) Stopped 2014-06-16 11:51:40,094 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2014-06-16 11:51:40,094 INFO [ omero.processor.ProcessorI] (MainThread) Cleaning up 2014-06-16 11:51:40,094 INFO [ omero.processor.ProcessorI] (MainThread) Done 2014-06-16 11:51:40,095 WARNI [ stderr] (MainThread) 2014-06-16 11:51:40.095085 Processor-0: error: Traceback (most recent call last): File "/usr/lib64/python2.6/site-packages/Ice/Ice.py", line 1127, in main status = self.doMain(args, initData) File "/usr/lib64/python2.6/site-packages/Ice/Ice.py", line 1174, in doMain return self.run(args) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 461, in run sys.exit(100) SystemExit: 100 2014-06-16 11:51:40,101 INFO [ omero.util.Resources] (Thread-2 ) Halted 2014-06-16 11:51:41,428 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2014-06-16 11:51:41,428 INFO [ omero.util.Server] (MainThread) Waiting 10000 ms on startup 2014-06-16 11:51:51,429 INFO [ omero.util.Server] (MainThread) Starting 2014-06-16 11:51:51,432 INFO [ omero.util.Resources] (Thread-2 ) Starting 2014-06-16 11:51:51,436 INFO [ omero.utils] (MainThread) Failed to get session on attempt 1 2014-06-16 11:52:01,439 INFO [ omero.utils] (MainThread) Failed to get session on attempt 2 2014-06-16 11:52:11,442 INFO [ omero.utils] (MainThread) Failed to get session on attempt 3 2014-06-16 11:52:21,444 INFO [ omero.utils] (MainThread) Failed to get session on attempt 4 2014-06-16 11:52:31,447 INFO [ omero.utils] (MainThread) Failed to get session on attempt 5 2014-06-16 11:52:41,449 INFO [ omero.utils] (MainThread) Failed to get session on attempt 6 2014-06-16 11:52:51,450 WARNI [ omero.utils] (MainThread) Reason: exception ::Ice::NoEndpointException { proxy = BlitzManager -t -e 1.1 @ BlitzAdapters } 2014-06-16 11:52:51,450 ERROR [ omero.util.Server] (MainThread) Failed initialization Traceback (most recent call last): File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 457, in run self.impl = self.impl_class(ctx) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/processor.py", line 732, in __init__ omero.util.Servant.__init__(self, ctx, needs_session = needs_session) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 534, in __init__ self.ctx.newSession() File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 311, in newSession self.session = internal_service_factory(self.communicator, stop_event = self.stop_event) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 194, in internal_service_factory raise excpt NoEndpointException: exception ::Ice::NoEndpointException { proxy = BlitzManager -t -e 1.1 @ BlitzAdapters } 2014-06-16 11:52:51,451 INFO [ omero.util.Server] (MainThread) Cleanup 2014-06-16 11:52:51,451 INFO [ omero.util.Server] (MainThread) Stopped 2014-06-16 11:52:51,451 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2014-06-16 11:52:51,452 INFO [ omero.processor.ProcessorI] (MainThread) Cleaning up 2014-06-16 11:52:51,452 INFO [ omero.processor.ProcessorI] (MainThread) Done 2014-06-16 11:52:51,453 WARNI [ stderr] (MainThread) 2014-06-16 11:52:51.453247 Processor-0: error: Traceback (most recent call last): File "/usr/lib64/python2.6/site-packages/Ice/Ice.py", line 1127, in main status = self.doMain(args, initData) File "/usr/lib64/python2.6/site-packages/Ice/Ice.py", line 1174, in doMain return self.run(args) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 461, in run sys.exit(100) SystemExit: 100 2014-06-16 11:52:51,465 INFO [ omero.util.Resources] (Thread-2 ) Halted 2014-06-16 11:52:52,802 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2014-06-16 11:52:52,803 INFO [ omero.util.Server] (MainThread) Waiting 10000 ms on startup 2014-06-16 11:53:02,803 INFO [ omero.util.Server] (MainThread) Starting 2014-06-16 11:53:02,806 INFO [ omero.util.Resources] (Thread-2 ) Starting 2014-06-16 11:53:02,811 INFO [ omero.utils] (MainThread) Failed to get session on attempt 1 2014-06-16 11:53:12,813 INFO [ omero.utils] (MainThread) Failed to get session on attempt 2 2014-06-16 11:53:22,815 INFO [ omero.utils] (MainThread) Failed to get session on attempt 3 2014-06-16 11:53:32,818 INFO [ omero.utils] (MainThread) Failed to get session on attempt 4 2014-06-16 11:53:42,820 INFO [ omero.utils] (MainThread) Failed to get session on attempt 5 2014-06-16 11:53:52,823 INFO [ omero.utils] (MainThread) Failed to get session on attempt 6 2014-06-16 11:54:02,823 WARNI [ omero.utils] (MainThread) Reason: exception ::Ice::NoEndpointException { proxy = BlitzManager -t -e 1.1 @ BlitzAdapters } 2014-06-16 11:54:02,824 ERROR [ omero.util.Server] (MainThread) Failed initialization Traceback (most recent call last): File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 457, in run self.impl = self.impl_class(ctx) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/processor.py", line 732, in __init__ omero.util.Servant.__init__(self, ctx, needs_session = needs_session) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 534, in __init__ self.ctx.newSession() File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 311, in newSession self.session = internal_service_factory(self.communicator, stop_event = self.stop_event) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 194, in internal_service_factory raise excpt NoEndpointException: exception ::Ice::NoEndpointException { proxy = BlitzManager -t -e 1.1 @ BlitzAdapters } 2014-06-16 11:54:02,825 INFO [ omero.util.Server] (MainThread) Cleanup 2014-06-16 11:54:02,825 INFO [ omero.util.Server] (MainThread) Stopped 2014-06-16 11:54:02,826 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2014-06-16 11:54:02,826 INFO [ omero.processor.ProcessorI] (MainThread) Cleaning up 2014-06-16 11:54:02,826 INFO [ omero.processor.ProcessorI] (MainThread) Done 2014-06-16 11:54:02,828 WARNI [ stderr] (MainThread) 2014-06-16 11:54:02.828017 Processor-0: error: Traceback (most recent call last): File "/usr/lib64/python2.6/site-packages/Ice/Ice.py", line 1127, in main status = self.doMain(args, initData) File "/usr/lib64/python2.6/site-packages/Ice/Ice.py", line 1174, in doMain return self.run(args) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 461, in run sys.exit(100) SystemExit: 100 2014-06-16 11:54:02,839 INFO [ omero.util.Resources] (Thread-2 ) Halted 2014-06-16 11:54:04,163 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2014-06-16 11:54:04,163 INFO [ omero.util.Server] (MainThread) Waiting 10000 ms on startup 2014-06-16 11:54:14,164 INFO [ omero.util.Server] (MainThread) Starting 2014-06-16 11:54:14,167 INFO [ omero.util.Resources] (Thread-2 ) Starting 2014-06-16 11:54:14,171 INFO [ omero.utils] (MainThread) Failed to get session on attempt 1 2014-06-16 11:54:24,174 INFO [ omero.utils] (MainThread) Failed to get session on attempt 2 2014-06-16 11:54:34,177 INFO [ omero.utils] (MainThread) Failed to get session on attempt 3 2014-06-16 11:54:44,179 INFO [ omero.utils] (MainThread) Failed to get session on attempt 4 2014-06-16 11:54:54,181 INFO [ omero.utils] (MainThread) Failed to get session on attempt 5 2014-06-16 11:55:04,184 INFO [ omero.utils] (MainThread) Failed to get session on attempt 6 2014-06-16 11:55:14,184 WARNI [ omero.utils] (MainThread) Reason: exception ::Ice::NoEndpointException { proxy = BlitzManager -t -e 1.1 @ BlitzAdapters } 2014-06-16 11:55:14,185 ERROR [ omero.util.Server] (MainThread) Failed initialization Traceback (most recent call last): File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 457, in run self.impl = self.impl_class(ctx) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/processor.py", line 732, in __init__ omero.util.Servant.__init__(self, ctx, needs_session = needs_session) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 534, in __init__ self.ctx.newSession() File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 311, in newSession self.session = internal_service_factory(self.communicator, stop_event = self.stop_event) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 194, in internal_service_factory raise excpt NoEndpointException: exception ::Ice::NoEndpointException { proxy = BlitzManager -t -e 1.1 @ BlitzAdapters } 2014-06-16 11:55:14,186 INFO [ omero.util.Server] (MainThread) Cleanup 2014-06-16 11:55:14,186 INFO [ omero.util.Server] (MainThread) Stopped 2014-06-16 11:55:14,186 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2014-06-16 11:55:14,186 INFO [ omero.processor.ProcessorI] (MainThread) Cleaning up 2014-06-16 11:55:14,187 INFO [ omero.processor.ProcessorI] (MainThread) Done 2014-06-16 11:55:14,188 WARNI [ stderr] (MainThread) 2014-06-16 11:55:14.187994 Processor-0: error: Traceback (most recent call last): File "/usr/lib64/python2.6/site-packages/Ice/Ice.py", line 1127, in main status = self.doMain(args, initData) File "/usr/lib64/python2.6/site-packages/Ice/Ice.py", line 1174, in doMain return self.run(args) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 461, in run sys.exit(100) SystemExit: 100 2014-06-16 11:55:14,200 INFO [ omero.util.Resources] (Thread-2 ) Halted 2014-06-16 11:55:15,525 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2014-06-16 11:55:15,525 INFO [ omero.util.Server] (MainThread) Waiting 10000 ms on startup 2014-06-16 11:55:25,526 INFO [ omero.util.Server] (MainThread) Starting 2014-06-16 11:55:25,529 INFO [ omero.util.Resources] (Thread-2 ) Starting 2014-06-16 11:55:25,534 INFO [ omero.utils] (MainThread) Failed to get session on attempt 1 2014-06-16 11:55:35,537 INFO [ omero.utils] (MainThread) Failed to get session on attempt 2 2014-06-16 11:55:45,540 INFO [ omero.utils] (MainThread) Failed to get session on attempt 3 2014-06-16 11:55:55,543 INFO [ omero.utils] (MainThread) Failed to get session on attempt 4 2014-06-16 11:56:05,545 INFO [ omero.utils] (MainThread) Failed to get session on attempt 5 2014-06-16 11:56:15,548 INFO [ omero.utils] (MainThread) Failed to get session on attempt 6 2014-06-16 11:56:25,549 WARNI [ omero.utils] (MainThread) Reason: exception ::Ice::NoEndpointException { proxy = BlitzManager -t -e 1.1 @ BlitzAdapters } 2014-06-16 11:56:25,549 ERROR [ omero.util.Server] (MainThread) Failed initialization Traceback (most recent call last): File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 457, in run self.impl = self.impl_class(ctx) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/processor.py", line 732, in __init__ omero.util.Servant.__init__(self, ctx, needs_session = needs_session) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 534, in __init__ self.ctx.newSession() File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 311, in newSession self.session = internal_service_factory(self.communicator, stop_event = self.stop_event) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 194, in internal_service_factory raise excpt NoEndpointException: exception ::Ice::NoEndpointException { proxy = BlitzManager -t -e 1.1 @ BlitzAdapters } 2014-06-16 11:56:25,550 INFO [ omero.util.Server] (MainThread) Cleanup 2014-06-16 11:56:25,550 INFO [ omero.util.Server] (MainThread) Stopped 2014-06-16 11:56:25,551 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2014-06-16 11:56:25,551 INFO [ omero.processor.ProcessorI] (MainThread) Cleaning up 2014-06-16 11:56:25,551 INFO [ omero.processor.ProcessorI] (MainThread) Done 2014-06-16 11:56:25,552 WARNI [ stderr] (MainThread) 2014-06-16 11:56:25.552311 Processor-0: error: Traceback (most recent call last): File "/usr/lib64/python2.6/site-packages/Ice/Ice.py", line 1127, in main status = self.doMain(args, initData) File "/usr/lib64/python2.6/site-packages/Ice/Ice.py", line 1174, in doMain return self.run(args) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 461, in run sys.exit(100) SystemExit: 100 2014-06-16 11:56:25,562 INFO [ omero.util.Resources] (Thread-2 ) Halted

Tables-0.log

Code: Select all: 2014-06-16 11:11:52,116 INFO [ omero.util.Server] (MainThread) Stopped 2014-06-16 11:11:52,116 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2014-06-16 11:50:25,168 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2014-06-16 11:50:25,169 INFO [ omero.util.Server] (MainThread) Waiting 10000 ms on startup 2014-06-16 11:50:35,169 INFO [ omero.util.Server] (MainThread) Starting 2014-06-16 11:50:35,169 INFO [ omero.util.Server] (MainThread) Loaded dependency numpy (1.6.2) 2014-06-16 11:50:35,170 INFO [ omero.util.Server] (MainThread) Loaded dependency tables (2.4.0, hdf=1.8.9) 2014-06-16 11:50:35,173 INFO [ omero.util.Resources] (Thread-2 ) Starting 2014-06-16 11:50:40,078 INFO [ omero.utils] (MainThread) Failed to get session on attempt 1 2014-06-16 11:50:50,080 INFO [ omero.utils] (MainThread) Failed to get session on attempt 2 2014-06-16 11:51:00,083 INFO [ omero.utils] (MainThread) Failed to get session on attempt 3 2014-06-16 11:51:10,086 INFO [ omero.utils] (MainThread) Failed to get session on attempt 4 2014-06-16 11:51:20,089 INFO [ omero.utils] (MainThread) Failed to get session on attempt 5 2014-06-16 11:51:30,091 INFO [ omero.utils] (MainThread) Failed to get session on attempt 6 2014-06-16 11:51:40,092 WARNI [ omero.utils] (MainThread) Reason: exception ::Ice::NoEndpointException { proxy = BlitzManager -t -e 1.1 @ BlitzAdapters } 2014-06-16 11:51:40,092 ERROR [ omero.util.Server] (MainThread) Failed initialization Traceback (most recent call last): File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 457, in run self.impl = self.impl_class(ctx) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/tables.py", line 825, in __init__ omero.util.Servant.__init__(self, ctx, needs_session = True) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 534, in __init__ self.ctx.newSession() File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 311, in newSession self.session = internal_service_factory(self.communicator, stop_event = self.stop_event) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 194, in internal_service_factory raise excpt NoEndpointException: exception ::Ice::NoEndpointException { proxy = BlitzManager -t -e 1.1 @ BlitzAdapters } 2014-06-16 11:51:40,093 INFO [ omero.util.Server] (MainThread) Cleanup 2014-06-16 11:51:40,094 INFO [ omero.util.Server] (MainThread) Stopped 2014-06-16 11:51:40,094 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2014-06-16 11:51:40,094 INFO [ omero.tables.TablesI] (MainThread) Cleaning up 2014-06-16 11:51:40,094 INFO [ omero.tables.TablesI] (MainThread) Done 2014-06-16 11:51:40,095 WARNI [ stderr] (MainThread) 2014-06-16 11:51:40.094972 Tables-0: error: Traceback (most recent call last): File "/usr/lib64/python2.6/site-packages/Ice/Ice.py", line 1127, in main status = self.doMain(args, initData) File "/usr/lib64/python2.6/site-packages/Ice/Ice.py", line 1174, in doMain return self.run(args) File "/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/python/omero/util/__init__.py", line 461, in run sys.exit(100) SystemExit: 100 2014-06-16 11:51:40,105 INFO [ omero.util.Resources] (Thread-2 ) Halted 2014-06-16 11:51:41,436 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2014-06-16 11:51:41,436 INFO [ omero.util.Server] (MainThread) Waiting 10000 ms on startup 2014-06-16 11:51:51,436 INFO [ omero.util.Server] (MainThread) Starting 2014-06-16 11:51:51,437 INFO [ omero.util.Server] (MainThread) Loaded dependency numpy (1.6.2) 2014-06-16 11:51:51,437 INFO [ omero.util.Server] (MainThread) Loaded dependency tables (2.4.0, hdf=1.8.9) 2014-06-16 11:51:51,440 INFO [ omero.util.Resources] (Thread-2 ) Starting 2014-06-16 11:51:51,445 INFO [ omero.utils] (MainThread) Failed to get session on attempt 1 2014-06-16 11:52:01,447 INFO [ omero.utils] (MainThread) Failed to get session on attempt 2 2014-06-16 11:52:11,450 INFO [ omero.utils] (MainThread) Failed to get session on attempt 3 2014-06-16 11:52:21,452 INFO [ omero.utils] (MainThread) Failed to get session on attempt 4 2014-06-16 11:52:31,455 INFO [ omero.utils] (MainThread) Failed to get session on attempt 5 2014-06-16 11:52:41,457 INFO [ omero.utils] (MainThread) Failed to get session on attempt 6 2014-06-16 11:52:51,457 WARNI [ omero.utils] (MainThread) Reason: exception ::Ice::NoEndpointException { proxy = BlitzManager -t -e 1.1 @ BlitzAdapters } (...)

PixelData-0.log
This one seems to be 1 hour behind in terms of time?!? The other logfiles report 11:50:25 for my failing Ice-3.5.1 OMERO startup event. This one however shows 10:50? Puzzled ....

Code: Select all: 2014-06-16 10:11:52,166 INFO [ ome.services.blitz.Entry] ( main) Finished shutdown. 2014-06-16 10:50:24,930 INFO [ ome.services.blitz.Entry] ( main) Waiting 10000 ms on startup 2014-06-16 10:50:34,938 INFO [ ome.services.blitz.Entry] ( main) Creating ome.pixeldata. Please wait... 2014-06-16 10:50:36,603 INFO [ ome.services.util.DBUserCheck] ( main) User root.id = 0 2014-06-16 10:50:36,605 INFO [ ome.services.util.DBUserCheck] ( main) User guest.id = 1 2014-06-16 10:50:36,605 INFO [ ome.services.util.DBUserCheck] ( main) Group system.id = 0 2014-06-16 10:50:36,605 INFO [ ome.services.util.DBUserCheck] ( main) Group user.id = 1 2014-06-16 10:50:36,605 INFO [ ome.services.util.DBUserCheck] ( main) Group guest.id = 2 2014-06-16 10:50:36,607 INFO [ ome.services.util.JvmSettingsCheck] ( main) Java version: 1.7.0_09; Linux; amd64; 2.6.32-431.17.1.el6.x86_64 2014-06-16 10:50:36,607 INFO [ ome.services.util.JvmSettingsCheck] ( main) Max Memory (MB): = 910 2014-06-16 10:50:36,608 INFO [ ome.services.util.JvmSettingsCheck] ( main) OS Memory (MB): = 48257 2014-06-16 10:50:36,608 INFO [ ome.services.util.JvmSettingsCheck] ( main) Processors: = 16 2014-06-16 10:50:36,638 INFO [.s.ShutdownSafeEhcacheManagerFactoryBean] ( main) Initializing EHCache CacheManager 2014-06-16 10:50:39,094 INFO [ ome.services.fulltext.FullTextAnalyzer] ( main) Initialized FullTextAnalyzer 2014-06-16 10:50:44,526 INFO [ ome.io.nio.PixelsService] ( main) Using Bio-Formats Cache: /export/omero/OMERO/BioFormatsCache 2014-06-16 10:50:44,526 INFO [ ome.io.nio.PixelsService] ( main) PixelsService(path=/export/omero/OMERO/, resolver=ome.services.OmeroFilePathResolver@1c601aee, backoff=ome.io.nio.SimpleBackOff(factor=43.6), sizes=ome.io.nio.ConfiguredTileSizes(w=256,h=256,W=3192,H=3192)) 2014-06-16 10:50:44,533 INFO [ ome.services.pixeldata.PixelDataThread] ( main) Initializing PixelDataThread (threads=2) 2014-06-16 10:50:44,816 INFO [ ome.services.db.DatabaseIdentity] ( main) Using LSID format: urn:lsid:export.openmicroscopy.org:%s:1d19f2e5-1db1-419c-8841-1b16c5e66b55_%s%s 2014-06-16 10:50:44,995 INFO [ ome.services.fulltext.FullTextThread] ( main) Initializing Full-Text Indexer 2014-06-16 10:50:45,007 INFO [ ome.tools.hibernate.ExtendedMetadata] ( main) Calculating ExtendedMetadata... 2014-06-16 10:50:45,189 INFO [ o.s.scheduler.SchedulerFactoryBean] ( main) Starting Quartz Scheduler now 2014-06-16 10:50:45,286 ERROR [ ome.services.blitz.Entry] ( main) Error on startup. Ice.SocketException: java.net.SocketException: Protocol family unavailable at IceInternal.Network.doBind(Network.java:251) ~[ice.jar:na] at IceInternal.TcpAcceptor.<init>(TcpAcceptor.java:119) ~[ice.jar:na] at IceInternal.TcpEndpointI.acceptor(TcpEndpointI.java:414) ~[ice.jar:na] at IceInternal.IncomingConnectionFactory.<init>(IncomingConnectionFactory.java:376) ~[ice.jar:na] at Ice.ObjectAdapterI.<init>(ObjectAdapterI.java:1028) ~[ice.jar:na] at IceInternal.ObjectAdapterFactory.createObjectAdapter(ObjectAdapterFactory.java:160) ~[ice.jar:na] at Ice.CommunicatorI.createObjectAdapter(CommunicatorI.java:77) ~[ice.jar:na] at ome.services.blitz.Entry.start(Entry.java:202) [blitz.jar:na] at ome.services.blitz.Entry.main(Entry.java:150) [blitz.jar:na] Caused by: java.net.SocketException: Protocol family unavailable at sun.nio.ch.Net.bind0(Native Method) ~[na:1.7.0_09] at sun.nio.ch.Net.bind(Net.java:344) ~[na:1.7.0_09] at sun.nio.ch.Net.bind(Net.java:336) ~[na:1.7.0_09] at sun.nio.ch.ServerSocketChannelImpl.bind(ServerSocketChannelImpl.java:199) ~[na:1.7.0_09] at sun.nio.ch.ServerSocketAdaptor.bind(ServerSocketAdaptor.java:74) ~[na:1.7.0_09] at IceInternal.Network.doBind(Network.java:245) ~[ice.jar:na] ... 8 common frames omitted 2014-06-16 10:50:45,286 INFO [ ome.services.blitz.Entry] ( main) Calling close on context ome.pixeldata 2014-06-16 10:50:45,292 INFO [ ome.services.fulltext.FullTextThread] ( main) Shutting down Full-Text Indexer 2014-06-16 10:50:45,293 INFO [ o.s.scheduler.SchedulerFactoryBean] ( main) Shutting down Quartz Scheduler 2014-06-16 10:50:45,295 INFO [ ome.services.pixeldata.PixelDataThread] ( main) Shutting down PixelDataThread 2014-06-16 10:50:45,312 INFO [.s.ShutdownSafeEhcacheManagerFactoryBean] ( main) Shutting down EHCache CacheManager 2014-06-16 10:50:45,313 INFO [ ome.services.blitz.Entry] ( main) Finished shutdown.

Posted: **Mon Jun 16, 2014 3:41 pm**

And the Blitz-0.log

Code: Select all: 2014-06-16 10:11:52,260 INFO [ ome.services.fulltext.FullTextThread] ( main) Shutting down Full-Text Indexer 2014-06-16 10:11:52,261 INFO [ o.s.scheduler.SchedulerFactoryBean] ( main) Shutting down Quartz Scheduler 2014-06-16 10:11:52,288 INFO [.s.ShutdownSafeEhcacheManagerFactoryBean] ( main) Shutting down EHCache CacheManager 2014-06-16 10:11:52,296 INFO [ ome.services.blitz.Entry] ( main) Finished shutdown. 2014-06-16 10:50:24,670 INFO [ ome.services.blitz.Entry] ( main) Creating OMERO.blitz. Please wait... 2014-06-16 10:50:26,087 INFO [.s.ShutdownSafeEhcacheManagerFactoryBean] ( main) Initializing EHCache CacheManager 2014-06-16 10:50:26,446 INFO [ ome.services.util.DBPatchCheck] ( main) Verified database patch: OMERO5.0__0 2014-06-16 10:50:26,484 INFO [ ome.services.util.DBUserCheck] ( main) User root.id = 0 2014-06-16 10:50:26,486 INFO [ ome.services.util.DBUserCheck] ( main) User guest.id = 1 2014-06-16 10:50:26,486 INFO [ ome.services.util.DBUserCheck] ( main) Group system.id = 0 2014-06-16 10:50:26,486 INFO [ ome.services.util.DBUserCheck] ( main) Group user.id = 1 2014-06-16 10:50:26,486 INFO [ ome.services.util.DBUserCheck] ( main) Group guest.id = 2 2014-06-16 10:50:28,743 INFO [ ome.services.fulltext.FullTextAnalyzer] ( main) Initialized FullTextAnalyzer 2014-06-16 10:50:32,264 INFO [ ome.services.db.DatabaseIdentity] ( main) Using LSID format: urn:lsid:export.openmicroscopy.org:%s:1d19f2e5-1db1-419c-8841-1b16c5e66b55_%s%s 2014-06-16 10:50:33,196 INFO [ org.perf4j.TimingLogger] ( main) start[1402912232326] time[870] tag[ome.io.nio.SimpleBackOff.256X256] 2014-06-16 10:50:33,347 INFO [ org.perf4j.TimingLogger] ( main) start[1402912233196] time[150] tag[ome.io.nio.SimpleBackOff.256X256] 2014-06-16 10:50:33,521 INFO [ org.perf4j.TimingLogger] ( main) start[1402912233347] time[174] tag[ome.io.nio.SimpleBackOff.256X256] 2014-06-16 10:50:33,569 INFO [ org.perf4j.TimingLogger] ( main) start[1402912233521] time[47] tag[ome.io.nio.SimpleBackOff.256X256] 2014-06-16 10:50:33,617 INFO [ org.perf4j.TimingLogger] ( main) start[1402912233571] time[46] tag[ome.io.nio.SimpleBackOff.256X256] 2014-06-16 10:50:33,782 INFO [ org.perf4j.TimingLogger] ( main) start[1402912233618] time[163] tag[ome.io.nio.SimpleBackOff.256X256] 2014-06-16 10:50:33,827 INFO [ org.perf4j.TimingLogger] ( main) start[1402912233782] time[44] tag[ome.io.nio.SimpleBackOff.256X256] 2014-06-16 10:50:33,872 INFO [ org.perf4j.TimingLogger] ( main) start[1402912233827] time[45] tag[ome.io.nio.SimpleBackOff.256X256] 2014-06-16 10:50:33,917 INFO [ org.perf4j.TimingLogger] ( main) start[1402912233872] time[44] tag[ome.io.nio.SimpleBackOff.256X256] 2014-06-16 10:50:33,962 INFO [ org.perf4j.TimingLogger] ( main) start[1402912233917] time[44] tag[ome.io.nio.SimpleBackOff.256X256] 2014-06-16 10:50:34,006 INFO [ org.perf4j.TimingLogger] ( main) start[1402912233963] time[43] tag[ome.io.nio.SimpleBackOff.256X256] 2014-06-16 10:50:34,049 INFO [ org.perf4j.TimingLogger] ( main) start[1402912234006] time[43] tag[ome.io.nio.SimpleBackOff.256X256] 2014-06-16 10:50:34,093 INFO [ org.perf4j.TimingLogger] ( main) start[1402912234050] time[43] tag[ome.io.nio.SimpleBackOff.256X256] 2014-06-16 10:50:34,137 INFO [ org.perf4j.TimingLogger] ( main) start[1402912234093] time[43] tag[ome.io.nio.SimpleBackOff.256X256] 2014-06-16 10:50:34,181 INFO [ org.perf4j.TimingLogger] ( main) start[1402912234137] time[44] tag[ome.io.nio.SimpleBackOff.256X256] 2014-06-16 10:50:34,229 INFO [ org.perf4j.TimingLogger] ( main) start[1402912234181] time[48] tag[ome.io.nio.SimpleBackOff.256X256] 2014-06-16 10:50:34,273 INFO [ org.perf4j.TimingLogger] ( main) start[1402912234230] time[43] tag[ome.io.nio.SimpleBackOff.256X256] 2014-06-16 10:50:34,317 INFO [ org.perf4j.TimingLogger] ( main) start[1402912234274] time[43] tag[ome.io.nio.SimpleBackOff.256X256] 2014-06-16 10:50:34,360 INFO [ org.perf4j.TimingLogger] ( main) start[1402912234317] time[43] tag[ome.io.nio.SimpleBackOff.256X256] 2014-06-16 10:50:34,404 INFO [ org.perf4j.TimingLogger] ( main) start[1402912234361] time[43] tag[ome.io.nio.SimpleBackOff.256X256] 2014-06-16 10:50:34,443 INFO [ ome.io.nio.PixelsService] ( main) Using Bio-Formats Cache: /export/omero/OMERO/BioFormatsCache 2014-06-16 10:50:34,444 INFO [ ome.io.nio.PixelsService] ( main) PixelsService(path=/export/omero/OMERO/, resolver=ome.services.OmeroFilePathResolver@45c6de90, backoff=ome.io.nio.SimpleBackOff(factor=43.6), sizes=ome.io.nio.ConfiguredTileSizes(w=256,h=256,W=3192,H=3192)) 2014-06-16 10:50:34,649 INFO [ ome.services.fulltext.FullTextThread] ( main) Initializing Full-Text Indexer 2014-06-16 10:50:34,660 INFO [ ome.services.pixeldata.PixelDataThread] ( main) Initializing PixelDataThread (create events only) 2014-06-16 10:50:34,664 INFO [ ome.services.util.JvmSettingsCheck] ( main) Java version: 1.7.0_09; Linux; amd64; 2.6.32-431.17.1.el6.x86_64 2014-06-16 10:50:34,664 INFO [ ome.services.util.JvmSettingsCheck] ( main) Max Memory (MB): = 1820 2014-06-16 10:50:34,665 INFO [ ome.services.util.JvmSettingsCheck] ( main) OS Memory (MB): = 48257 2014-06-16 10:50:34,665 INFO [ ome.services.util.JvmSettingsCheck] ( main) Processors: = 16 2014-06-16 10:50:35,024 INFO [ ome.services.util.BaseDBCheck] ( main) performed DB check DBEnumCheck: done for Bio-Formats revision 0c4215a 2014-06-16 10:50:35,190 INFO [ ome.services.util.DBUInt16Check] ( main) updated bit-size of uint16 among pixel types 2014-06-16 10:50:36,697 INFO [ ome.services.util.BaseDBCheck] ( main) performed DB check DBBadAnnotationCheck: done 2014-06-16 10:50:36,698 INFO [ ome.services.util.ServerVersionCheck] ( main) ------------------------------------------------- 2014-06-16 10:50:36,698 INFO [ ome.services.util.ServerVersionCheck] ( main) OMERO Version: 5.0.2-ice35-b26 Ready. 2014-06-16 10:50:36,698 INFO [ ome.services.util.ServerVersionCheck] ( main) ------------------------------------------------- 2014-06-16 10:50:39,053 INFO [ ome.system.UpgradeCheck] ( main) no update needed 2014-06-16 10:50:39,059 INFO [ ome.tools.hibernate.ExtendedMetadata] ( main) Calculating ExtendedMetadata... 2014-06-16 10:50:39,178 INFO [ o.s.scheduler.SchedulerFactoryBean] ( main) Starting Quartz Scheduler now 2014-06-16 10:50:39,185 INFO [ ome.services.util.ServiceHandler] ( main) Executor.doWork -- ome.services.util.NamespaceCheck.namespaceCheck 2014-06-16 10:50:39,186 INFO [ ome.services.util.ServiceHandler] ( main) Args: [null, InternalSF@1733761540] 2014-06-16 10:50:39,363 INFO [ ome.security.basic.EventHandler] ( main) Auth: user=0,group=0,event=1335801(Internal),sess=adc48233-a7f3-42d8-95de-44a268dabb5c 2014-06-16 10:50:39,393 INFO [ org.perf4j.TimingLogger] ( main) start[1402912239186] time[207] tag[omero.call.success.ome.services.util.NamespaceCheck$1.doWork] 2014-06-16 10:50:39,393 INFO [ ome.services.util.ServiceHandler] ( main) Rslt: null 2014-06-16 10:50:39,621 INFO [o.services.blitz.util.BlitzConfiguration] ( main) Initializing Ice.Communicator 2014-06-16 10:50:39,731 ERROR [ ome.services.blitz.fire.Ring] ( main) Error stopping ring ome.services.blitz.fire.Ring@11af22e7 java.lang.NullPointerException: null at ome.services.blitz.fire.Ring.destroy(Ring.java:201) ~[blitz.jar:na] at ome.services.blitz.util.BlitzConfiguration.destroy(BlitzConfiguration.java:283) [blitz.jar:na] at ome.services.blitz.util.BlitzConfiguration.<init>(BlitzConfiguration.java:135) [blitz.jar:na] at ome.services.blitz.util.BlitzConfiguration.<init>(BlitzConfiguration.java:82) [blitz.jar:na] at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) [na:1.7.0_09] at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) [na:1.7.0_09] at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) [na:1.7.0_09] at java.lang.reflect.Constructor.newInstance(Constructor.java:525) [na:1.7.0_09] at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:126) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:107) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:273) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:984) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:888) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:479) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:189) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:344) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:964) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:870) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:479) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:189) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:322) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:106) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1308) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1067) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:511) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:189) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:562) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:871) [org.springframework.context.jar:3.0.1.RELEASE-A] at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:423) [org.springframework.context.jar:3.0.1.RELEASE-A] at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139) [org.springframework.context.jar:3.0.1.RELEASE-A] at ome.system.OmeroContext.<init>(OmeroContext.java:103) [common.jar:na] at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) [na:1.7.0_09] at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) [na:1.7.0_09] at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) [na:1.7.0_09] at java.lang.reflect.Constructor.newInstance(Constructor.java:525) [na:1.7.0_09] at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:126) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:107) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:273) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:984) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:888) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:479) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1048) [org.springframework.context.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:397) [org.springframework.beans.jar:3.0.1.RELEASE-A] at ome.system.OmeroContext.getInstance(OmeroContext.java:203) [common.jar:na] at ome.services.blitz.Entry.start(Entry.java:193) [blitz.jar:na] at ome.services.blitz.Entry.main(Entry.java:150) [blitz.jar:na] 2014-06-16 10:50:39,732 ERROR [ ome.services.blitz.fire.Ring] ( main) Error signaling down to: null java.lang.NullPointerException: null at ome.services.blitz.fire.Ring.destroy(Ring.java:214) ~[blitz.jar:na] at ome.services.blitz.util.BlitzConfiguration.destroy(BlitzConfiguration.java:283) [blitz.jar:na] at ome.services.blitz.util.BlitzConfiguration.<init>(BlitzConfiguration.java:135) [blitz.jar:na] at ome.services.blitz.util.BlitzConfiguration.<init>(BlitzConfiguration.java:82) [blitz.jar:na] at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) [na:1.7.0_09] at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) [na:1.7.0_09] at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) [na:1.7.0_09] at java.lang.reflect.Constructor.newInstance(Constructor.java:525) [na:1.7.0_09] at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:126) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:107) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:273) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:984) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:888) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:479) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:189) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:344) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:964) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:870) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:479) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:189) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:322) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:106) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1308) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1067) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:511) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:189) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:562) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:871) [org.springframework.context.jar:3.0.1.RELEASE-A] at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:423) [org.springframework.context.jar:3.0.1.RELEASE-A] at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139) [org.springframework.context.jar:3.0.1.RELEASE-A] at ome.system.OmeroContext.<init>(OmeroContext.java:103) [common.jar:na] at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) [na:1.7.0_09] at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) [na:1.7.0_09] at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) [na:1.7.0_09] at java.lang.reflect.Constructor.newInstance(Constructor.java:525) [na:1.7.0_09] at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:126) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:107) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:273) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:984) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:888) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:479) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) [org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1048) [org.springframework.context.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:397) [org.springframework.beans.jar:3.0.1.RELEASE-A] at ome.system.OmeroContext.getInstance(OmeroContext.java:203) [common.jar:na] at ome.services.blitz.Entry.start(Entry.java:193) [blitz.jar:na] at ome.services.blitz.Entry.main(Entry.java:150) [blitz.jar:na] 2014-06-16 10:50:39,733 INFO [o.services.blitz.util.BlitzConfiguration] ( main) Shutting down Ice.Communicator 2014-06-16 10:50:39,742 ERROR [ ome.services.blitz.Entry] ( main) Error on startup. org.springframework.beans.factory.access.BootstrapException: Unable to return specified BeanFactory instance: factory key [OMERO.blitz], from group with resource name [classpath*:beanRefContext.xml]; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'OMERO.blitz' defined in URL [jar:file:/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/server/blitz.jar!/beanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'omero.rtypes.RTypeObjectFactoryRegistry#0' defined in class path resource [ome/services/objectfactories.xml]: Cannot resolve reference to bean 'Ice.Communicator' while setting bean property 'iceCommunicator'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'configuration' defined in URL [jar:file:/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/server/blitz.jar!/ome/services/blitz-config.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.util.BlitzConfiguration]: Constructor threw exception; nested exception is org.springframework.beans.FatalBeanException: Could not find Ice config for object adapter [ BlitzAdapter ] at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:409) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at ome.system.OmeroContext.getInstance(OmeroContext.java:203) ~[common.jar:na] at ome.services.blitz.Entry.start(Entry.java:193) [blitz.jar:na] at ome.services.blitz.Entry.main(Entry.java:150) [blitz.jar:na] Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'OMERO.blitz' defined in URL [jar:file:/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/server/blitz.jar!/beanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'omero.rtypes.RTypeObjectFactoryRegistry#0' defined in class path resource [ome/services/objectfactories.xml]: Cannot resolve reference to bean 'Ice.Communicator' while setting bean property 'iceCommunicator'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'configuration' defined in URL [jar:file:/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/server/blitz.jar!/ome/services/blitz-config.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.util.BlitzConfiguration]: Constructor threw exception; nested exception is org.springframework.beans.FatalBeanException: Could not find Ice config for object adapter [ BlitzAdapter ] at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:281) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:984) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:888) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:479) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1048) ~[org.springframework.context.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:397) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] ... 3 common frames omitted Caused by: org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'omero.rtypes.RTypeObjectFactoryRegistry#0' defined in class path resource [ome/services/objectfactories.xml]: Cannot resolve reference to bean 'Ice.Communicator' while setting bean property 'iceCommunicator'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'configuration' defined in URL [jar:file:/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/server/blitz.jar!/ome/services/blitz-config.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.util.BlitzConfiguration]: Constructor threw exception; nested exception is org.springframework.beans.FatalBeanException: Could not find Ice config for object adapter [ BlitzAdapter ] at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:141) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:107) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:273) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] ... 13 common frames omitted Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'omero.rtypes.RTypeObjectFactoryRegistry#0' defined in class path resource [ome/services/objectfactories.xml]: Cannot resolve reference to bean 'Ice.Communicator' while setting bean property 'iceCommunicator'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'configuration' defined in URL [jar:file:/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/server/blitz.jar!/ome/services/blitz-config.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.util.BlitzConfiguration]: Constructor threw exception; nested exception is org.springframework.beans.FatalBeanException: Could not find Ice config for object adapter [ BlitzAdapter ] at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:328) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:106) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1308) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1067) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:511) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:189) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:562) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:871) ~[org.springframework.context.jar:3.0.1.RELEASE-A] at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:423) ~[org.springframework.context.jar:3.0.1.RELEASE-A] at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139) ~[org.springframework.context.jar:3.0.1.RELEASE-A] at ome.system.OmeroContext.<init>(OmeroContext.java:103) ~[common.jar:na] at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[na:1.7.0_09] at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) ~[na:1.7.0_09] at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[na:1.7.0_09] at java.lang.reflect.Constructor.newInstance(Constructor.java:525) ~[na:1.7.0_09] at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:126) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] ... 15 common frames omitted Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'configuration' defined in URL [jar:file:/home/omeronas/OMERO.server-5.0.2-ice35-b26/lib/server/blitz.jar!/ome/services/blitz-config.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.util.BlitzConfiguration]: Constructor threw exception; nested exception is org.springframework.beans.FatalBeanException: Could not find Ice config for object adapter [ BlitzAdapter ] at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:281) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:984) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:888) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:479) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:189) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:344) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:964) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:870) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:479) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:189) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:322) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] ... 34 common frames omitted Caused by: org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.util.BlitzConfiguration]: Constructor threw exception; nested exception is org.springframework.beans.FatalBeanException: Could not find Ice config for object adapter [ BlitzAdapter ] at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:141) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:107) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:273) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] ... 52 common frames omitted Caused by: org.springframework.beans.FatalBeanException: Could not find Ice config for object adapter [ BlitzAdapter ] at ome.services.blitz.util.BlitzConfiguration.createAdapter(BlitzConfiguration.java:246) ~[blitz.jar:na] at ome.services.blitz.util.BlitzConfiguration.<init>(BlitzConfiguration.java:120) ~[blitz.jar:na] at ome.services.blitz.util.BlitzConfiguration.<init>(BlitzConfiguration.java:82) ~[blitz.jar:na] at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[na:1.7.0_09] at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) ~[na:1.7.0_09] at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[na:1.7.0_09] at java.lang.reflect.Constructor.newInstance(Constructor.java:525) ~[na:1.7.0_09] at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:126) ~[org.springframework.beans.jar:3.0.1.RELEASE-A] ... 54 common frames omitted

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omero.server-5.0.0-ice35-b19 would not start on CentOS 6.2

omero.server-5.0.0-ice35-b19 would not start on CentOS 6.2

Re: omero.server-5.0.0-ice35-b19 would not start on CentOS 6

Re: omero.server-5.0.0-ice35-b19 would not start on CentOS 6

Re: omero.server-5.0.0-ice35-b19 would not start on CentOS 6

Re: omero.server-5.0.0-ice35-b19 would not start on CentOS 6

Re: omero.server-5.0.0-ice35-b19 would not start on CentOS 6

Re: omero.server-5.0.0-ice35-b19 would not start on CentOS 6

Re: omero.server-5.0.0-ice35-b19 would not start on CentOS 6

Re: omero.server-5.0.0-ice35-b19 would not start on CentOS 6

Re: omero.server-5.0.0-ice35-b19 would not start on CentOS 6