Unable to start Omero
Posted: Wed Sep 03, 2014 5:21 pm
I am unable to get Omero to start. Please, can you help me determine the problem.
Below are:
The Omero Admin Start results from the shell.
A logged entry from Blitz log
Omero Admin Diagnostics results.
Omero Config Get results
and
results of -\l and -\d
Thanks
Bob
omero_database-> - \l
List of databases
Name | Owner | Encoding | Collate | Ctype | Access privilege
----------------+----------+----------+----------------------------+----------------------------+-------------------
omero_database | db_user | UTF8 | English_United States.1252 | English_United States.1252 |
postgres | postgres | UTF8 | English_United States.1252 | English_United States.1252 |
template0 | postgres | UTF8 | English_United States.1252 | English_United States.1252 | =c/postgres
| | | | | postgres=CTc/postg
template1 | postgres | UTF8 | English_United States.1252 | English_United States.1252 | =c/postgres
| | | | | postgres=CTc/postg
(4 rows)
omero_database-> - \d
No relations found.
omero_database->
-------------------
C:\Omero.server\bin>omero admin start
No descriptor given. Using etc\grid\windefault.xml
Installing OMERO.master Windows service.
Successfully installed OMERO.master Windows service.
Starting OMERO.master Windows service.
Waiting on startup. Use CTRL-C to exit
.............................
Failed to startup some components after 300 seconds
Calling "stop" on remaining components
OMERO.master service deleted.
Waiting on shutdown. Use CTRL-C to exit
......
C:\Omero.server\bin>
------------------------------------
From Bliltz-0.log
Error connecting to database table dbpatch. You may need to bootstrap.
See http://www.openmicroscopy.org/site/supp ... grade.html
------------------------------------
From Omero Admin Diagnostics
================================================================================
OMERO Diagnostics 5.0.4-ice35-b43
================================================================================
Commands: java -version 1.7.0 (C:\Windows\system32\java.EXE)
Commands: python -V 2.7.8 (C:\Python27\python.EXE)
Commands: icegridnode --version 3.5.1 (C:\ice\bin\icegridnode.EXE)
Commands: icegridadmin --version 3.5.1 (C:\ice\bin\icegridadmin.EXE)
Commands: psql --version 9.3.5 (C:\Program Files\PostgreSQL\9.3\bin\psql.EXE)
Server: icegridnode not started
Cannot list deployed applications.
Log dir: C:\Omero.server\var\log exists
Log files: Blitz-0.log 74.0 KB errors=40 warnings=0
Log files: DropBox.log 3.0 KB errors=4 warnings=2
Log files: FileServer.log 0.0 KB
Log files: Indexer-0.log 32.0 KB errors=20 warnings=0
Log files: MonitorServer.log 0.0 KB
Log files: OMEROweb.log n/a
Log files: PixelData-0.log 32.0 KB errors=20 warnings=0
Log files: Processor-0.log 29.0 KB errors=16 warnings=8
Log files: Tables-0.log n/a
Log files: TestDropBox.log n/a
Log files: master.err 0.0 KB
Log files: master.out 0.0 KB
Log files: Total size 0.17 MB
Environment:OMERO_HOME=(unset)
Environment:OMERO_NODE=(unset)
Environment:OMERO_MASTER=(unset)
Environment:OMERO_TEMPDIR=(unset)
Environment:PATH=C:\Python27\;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\ice\bin;C:\python27\Scripts;C:\Program Files\PostgreSQL\9.3\bin
Environment:PYTHONPATH=C:\ICE\python
Environment:ICE_HOME=C:\ICE
Environment:LD_LIBRARY_PATH=(unset)
Environment:DYLD_LIBRARY_PATH=(unset)
OMERO data dir: 'c:\\omero' Exists? True Is writable? True
OMERO temp dir: 'C:\Users\rgagnon\AppData\Roaming\omero\tmp' Exists? True Is writable? True (Size: 0)
OMERO.web status... [NOT STARTED]
----------------------------
From omero config get
C:\Omero.server\bin>omero config get
omero.data.dir=c:\\omero
omero.db.name=omero_database
omero.db.pass=xxxxxxx
omero.db.user=db_user
---
Below are:
The Omero Admin Start results from the shell.
A logged entry from Blitz log
Omero Admin Diagnostics results.
Omero Config Get results
and
results of -\l and -\d
Thanks
Bob
omero_database-> - \l
List of databases
Name | Owner | Encoding | Collate | Ctype | Access privilege
----------------+----------+----------+----------------------------+----------------------------+-------------------
omero_database | db_user | UTF8 | English_United States.1252 | English_United States.1252 |
postgres | postgres | UTF8 | English_United States.1252 | English_United States.1252 |
template0 | postgres | UTF8 | English_United States.1252 | English_United States.1252 | =c/postgres
| | | | | postgres=CTc/postg
template1 | postgres | UTF8 | English_United States.1252 | English_United States.1252 | =c/postgres
| | | | | postgres=CTc/postg
(4 rows)
omero_database-> - \d
No relations found.
omero_database->
-------------------
C:\Omero.server\bin>omero admin start
No descriptor given. Using etc\grid\windefault.xml
Installing OMERO.master Windows service.
Successfully installed OMERO.master Windows service.
Starting OMERO.master Windows service.
Waiting on startup. Use CTRL-C to exit
.............................
Failed to startup some components after 300 seconds
Calling "stop" on remaining components
OMERO.master service deleted.
Waiting on shutdown. Use CTRL-C to exit
......
C:\Omero.server\bin>
------------------------------------
From Bliltz-0.log
Error connecting to database table dbpatch. You may need to bootstrap.
See http://www.openmicroscopy.org/site/supp ... grade.html
------------------------------------
From Omero Admin Diagnostics
================================================================================
OMERO Diagnostics 5.0.4-ice35-b43
================================================================================
Commands: java -version 1.7.0 (C:\Windows\system32\java.EXE)
Commands: python -V 2.7.8 (C:\Python27\python.EXE)
Commands: icegridnode --version 3.5.1 (C:\ice\bin\icegridnode.EXE)
Commands: icegridadmin --version 3.5.1 (C:\ice\bin\icegridadmin.EXE)
Commands: psql --version 9.3.5 (C:\Program Files\PostgreSQL\9.3\bin\psql.EXE)
Server: icegridnode not started
Cannot list deployed applications.
Log dir: C:\Omero.server\var\log exists
Log files: Blitz-0.log 74.0 KB errors=40 warnings=0
Log files: DropBox.log 3.0 KB errors=4 warnings=2
Log files: FileServer.log 0.0 KB
Log files: Indexer-0.log 32.0 KB errors=20 warnings=0
Log files: MonitorServer.log 0.0 KB
Log files: OMEROweb.log n/a
Log files: PixelData-0.log 32.0 KB errors=20 warnings=0
Log files: Processor-0.log 29.0 KB errors=16 warnings=8
Log files: Tables-0.log n/a
Log files: TestDropBox.log n/a
Log files: master.err 0.0 KB
Log files: master.out 0.0 KB
Log files: Total size 0.17 MB
Environment:OMERO_HOME=(unset)
Environment:OMERO_NODE=(unset)
Environment:OMERO_MASTER=(unset)
Environment:OMERO_TEMPDIR=(unset)
Environment:PATH=C:\Python27\;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\ice\bin;C:\python27\Scripts;C:\Program Files\PostgreSQL\9.3\bin
Environment:PYTHONPATH=C:\ICE\python
Environment:ICE_HOME=C:\ICE
Environment:LD_LIBRARY_PATH=(unset)
Environment:DYLD_LIBRARY_PATH=(unset)
OMERO data dir: 'c:\\omero' Exists? True Is writable? True
OMERO temp dir: 'C:\Users\rgagnon\AppData\Roaming\omero\tmp' Exists? True Is writable? True (Size: 0)
OMERO.web status... [NOT STARTED]
----------------------------
From omero config get
C:\Omero.server\bin>omero config get
omero.data.dir=c:\\omero
omero.db.name=omero_database
omero.db.pass=xxxxxxx
omero.db.user=db_user
---