OMERO.web (5.2.0) fails on Yosemite
Posted: Wed Nov 11, 2015 5:16 pmHi,
I'm not able to log in to OMERO.web.
I get an error "Error: Server is not responding, please contact administrator." but I can successfully log in with OMERO.insight.
I get the following error in var/log/OMEROweb.log:
I'm surprised because I have the following DYLD_LIBRARY_PATH:
Here is the output of my configs:
And here is my diagnostic information (it shows that OMERO.web does not start):
Any help to get OMERO.web to work will be appreciated.
Regards,
Paul
I'm not able to log in to OMERO.web.
I get an error "Error: Server is not responding, please contact administrator." but I can successfully log in with OMERO.insight.
I get the following error in var/log/OMEROweb.log:
- Code: Select all
2015-11-11 16:55:25,424 ERROR [ omeroweb.connector] (proc.03709) create_guest_connection:190 Cannot create a guest connection.
Traceback (most recent call last):
File "/Users/pkorir/omero/OMERO.server-5.2.0-ice35-b12/lib/python/omeroweb/connector.py", line 184, in create_guest_connection
connection = self.create_gateway(useragent, guest, guest, None)
File "/Users/pkorir/omero/OMERO.server-5.2.0-ice35-b12/lib/python/omeroweb/connector.py", line 149, in create_gateway
useragent=useragent, anonymous=self.is_public, userip=userip)
File "/Users/pkorir/omero/OMERO.server-5.2.0-ice35-b12/lib/python/omero/__init__.py", line 62, in client_wrapper
return omero.gateway.BlitzGateway(*args, **kwargs)
File "/Users/pkorir/omero/OMERO.server-5.2.0-ice35-b12/lib/python/omeroweb/webclient/webclient_gateway.py", line 130, in __init__
super(OmeroWebGateway, self).__init__(*args, **kwargs)
File "/Users/pkorir/omero/OMERO.server-5.2.0-ice35-b12/lib/python/omero/gateway/__init__.py", line 1479, in __init__
self._resetOmeroClient()
File "/Users/pkorir/omero/OMERO.server-5.2.0-ice35-b12/lib/python/omero/gateway/__init__.py", line 1921, in _resetOmeroClient
args=['--Ice.Config='+','.join(self.ice_config)])
File "/Users/pkorir/omero/OMERO.server-5.2.0-ice35-b12/lib/python/omero/__init__.py", line 67, in client
return omero.clients.BaseClient(*args, **kwargs)
File "/Users/pkorir/omero/OMERO.server-5.2.0-ice35-b12/lib/python/omero/clients.py", line 140, in __init__
self._initData(id)
File "/Users/pkorir/omero/OMERO.server-5.2.0-ice35-b12/lib/python/omero/clients.py", line 255, in _initData
self.__ic = Ice.initialize(id)
File "/Library/Python/2.7/site-packages/Ice.py", line 647, in initialize
communicator = IcePy.Communicator(args, data)
PluginInitializationException: exception ::Ice::PluginInitializationException
{
reason = unable to load entry point `IceSSL:createIceSSL': dlopen(libIceSSL.35.dylib, 10): image not found; dlopen(libIceSSL.35.so, 10): image not found; dlopen(libIceSSL.35.bundle, 10): image not found
}
I'm surprised because I have the following DYLD_LIBRARY_PATH:
- Code: Select all
/Library/Developer/Ice-3.5.1/lib:/Library/Developer/Ice-3.5.1/lib/c++11:/Applications/IMOD/lib::/usr/local/bsoft/lib
Here is the output of my configs:
- Code: Select all
Ice.Default.Host=0.0.0.0
Ice.IPv6=0
omero.db.name=omero_database
omero.db.pass=********
omero.db.user=pg_user
omero.web.application_server=wsgi
omero.web.prefix=/omero
omero.web.static_url=/omero/static
And here is my diagnostic information (it shows that OMERO.web does not start):
- Code: Select all
================================================================================
OMERO Diagnostics 5.2.0-ice35-b12
================================================================================
Commands: java -version 1.8.0 (/usr/bin/java)
Commands: python -V 2.7.10 (/usr/bin/python)
Commands: icegridnode --version 3.5.1 (/Library/Developer/Ice-3.5/bin/icegridnode)
Commands: icegridadmin --version 3.5.1 (/Library/Developer/Ice-3.5/bin/icegridadmin)
Commands: psql --version 9.4.5 (/Applications/Postgres.app/Contents/Versions/9.4/bin/psql)
Server: icegridnode running
Server: Blitz-0 active (pid = 3743, enabled)
Server: DropBox active (pid = 3744, enabled)
Server: FileServer active (pid = 3745, enabled)
Server: Indexer-0 active (pid = 3746, enabled)
Server: MonitorServer active (pid = 3747, enabled)
Server: OMERO.Glacier2 active (pid = 3748, enabled)
Server: OMERO.IceStorm active (pid = 3751, enabled)
Server: PixelData-0 active (pid = 3749, enabled)
Server: Processor-0 active (pid = 3750, enabled)
Server: Tables-0 active (pid = 3752, enabled)
Server: TestDropBox inactive (enabled)
Log dir: /Users/pkorir/omero/OMERO.server-5.2.0-ice35-b12/var/log exists
Log files: Blitz-0.log n/a
Log files: DropBox.log n/a
Log files: FileServer.log n/a
Log files: Indexer-0.log n/a
Log files: MonitorServer.log n/a
Log files: OMEROweb.lock 0.0 KB
Log files: OMEROweb.log 4.0 KB errors=2 warnings=0
Log files: OMEROweb_brokenrequest.lock 0.0 KB
Log files: OMEROweb_brokenrequest.log 0.0 KB
Log files: Processor-0.log n/a
Log files: Tables-0.log n/a
Log files: TestDropBox.log n/a
Log files: Total size 0.00 MB
Error while parsing logs
Environment:OMERO_HOME=(unset)
Environment:OMERO_NODE=(unset)
Environment:OMERO_MASTER=(unset)
Environment:OMERO_USERDIR=(unset)
Environment:OMERO_TMPDIR=(unset)
Environment:PATH=/Library/Developer/Ice-3.5/bin:/Applications/IMOD/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/usr/local/bsoft/bin:/Applications/Postgres.app/Contents/Versions/9.4/bin:/Users/pkorir/Code
Environment:PYTHONPATH=(unset)
Environment:ICE_HOME=/Library/Developer/Ice-3.5
Environment:LD_LIBRARY_PATH=/Library/Developer/Ice-3.5.1/lib:/Library/Developer/Ice-3.5.1/lib/c++11:
Environment:DYLD_LIBRARY_PATH=/Library/Developer/Ice-3.5.1/lib:/Library/Developer/Ice-3.5.1/lib/c++11:/Applications/IMOD/lib::/usr/local/bsoft/lib
OMERO SSL port:4064
OMERO TCP port:4063
OMERO data dir:'/OMERO' Exists? True Is writable? True
OMERO temp dir:'/Users/pkorir/omero/tmp' Exists? True Is writable? True (Size: 0)
JVM settings: Blitz-${index} -Xmx2576m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
JVM settings: Indexer-${index} -Xmx1717m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
JVM settings: PixelData-${index} -Xmx2576m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
JVM settings: Repository-${index} -Xmx1717m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
OMERO.web status... [NOT STARTED]
Django version: 1.8.6
Any help to get OMERO.web to work will be appreciated.
Regards,
Paul