Open Microscopy Environment

Hi!

I have installed Omero webtagging without errors following steps here: https://www-legacy.openmicroscopy.org/s ... webtagging

When clicking on new top menu button "Tag Search", it goes to .../omero_webtagging_tagsearch relative to current url. For example: http://omero.local/webclient/omero_webtagging_tagsearch which is a URL that does not exist. Not sure if it has to exist....

But i test URL http://omero.local/omero_webtagging_tagsearch and is working. So i think this top menu button should go there. Am i right?

Thanks

Hi borja8,

Could you please show us the output of your OMERO.web's config via

Code: Select all

bin/omero config get

Editing out any sensitive details you may not wish shared.

Many thanks,

Kenny

kennethgillen wrote:Hi borja8,

Could you please show us the output of your OMERO.web's config via

Code: Select all

bin/omero config get

Editing out any sensitive details you may not wish shared.

Many thanks,

Kenny

bin/omero config get
omero.web.application_server=wsgi-tcp
omero.web.application_server.max_requests=500
omero.web.apps=["omero_figure", "omero_webtagging_autotag", "omero_webtagging_tagsearch"]
omero.web.middleware=[{"index": 1, "class": "django.middleware.common.BrokenLinkEmailsMiddleware"}, {"index": 2, "class": "django.middleware.common.CommonMiddleware"}, {"index": 3, "class": "django.contrib.sessions.middleware.SessionMiddleware"}, {"index": 4, "class": "django.middleware.csrf.CsrfViewMiddleware"}, {"index": 5, "class": "django.contrib.messages.middleware.MessageMiddleware"}, {"index": 0, "class": "whitenoise.middleware.WhiteNoiseMiddleware"}]
omero.web.open_with=[["Image viewer", "webgateway", {"supported_objects": ["image"], "script_url": "webclient/javascript/ome.openwith_viewer.js"}], ["omero_figure", "new_figure", {"supported_objects": ["images"], "target": "_blank", "label": "OMERO.figure"}]]
omero.web.ui.center_plugins=[["Auto Tag", "omero_webtagging_autotag/auto_tag_init.js.html", "auto_tag_panel"]]
omero.web.ui.top.links=[["Figure", "figure_index", {"target": "_blank", "title": "Open Figure in new tab"}]]
omero.web.ui.top_links=[["Data", "webindex", {"title": "Browse Data via Projects, Tags etc"}], ["History", "history", {"title": "History"}], ["Help", "http://help.openmicroscopy.org/", {"target": "new", "title": "Open OMERO user guide in a new tab"}], ["Tag Search", "omero_webtagging_tagsearch"]]
omero.web.wsgi_workers=5

Hello again borja8,

I notice a discrepancy between the instructions on our "tagsearch" page at openmicroscopy.org, and the newer set of instructions at PyPi. i.e.

Try the following in your omero.web.ui.top_links instead:

Code: Select all

["Tag Search", "tagsearch"]

If that's the fix, I'll submit a PR to update that on our website. Apologies if that's been the cause of your troubles.

Best,

Kenny

kennethgillen wrote:Hello again borja8,

I notice a discrepancy between the instructions on our "tagsearch" page at openmicroscopy.org, and the newer set of instructions at PyPi. i.e.

Try the following in your omero.web.ui.top_links instead:

Code: Select all

["Tag Search", "tagsearch"]

If that's the fix, I'll submit a PR to update that on our website. Apologies if that's been the cause of your troubles.

Best,

Kenny

No problem
Whats the command for replace?

You can use

Code: Select all

bin/omero config set

to replace the whole value of omero.web.ui.top_links with the new updated value.

There's also

Code: Select all

bin/omero config edit

which will give you a text editor to make the changes in place, too. For a small change like this, if you aren't loading your OMERO config from a separate file[s], then this is probably the easiest way to make the change.

And you'll need to restart OMERO.web for the changes to become effective.

See https://docs.openmicroscopy.org/omero/5 ... g.html#id2 for the specifics.