Bioformats OME.tiff saving - performance

[yuriy_alexandrov]

Hi again - I checked it again and found that, in order to make image looking in Omero-Insight as in Matlab, it's enough simply to use (I') instead (I) on OME.tiff creation input, but in order to save image properly, one needs to keep this size flip-flop in createMinimalOMEXMLMetadata.
So I leave it for now without change in my repo, as it seemingly falls into "Don't fix it if not broken" category.

Best regards,
Y.

[yuriy_alexandrov]

(last one most likely)

I found that BFMatlab convention on XY sizes, as Sebastien explained, works OK, - if one reproduces attentively what bfsave does.

The correct use of saveBytes in my case is

Code: Select all

writer.saveBytes(index-1, getBytes(I'));

the difference is that previously I forgot transpose; now it is fixed.

Thanks again Sebastien,
Y.

[sbesson]

Hi Yuriy,

glad this is working. If there is anything you think we could add either to the Bio-Formats documentation or the function headers to make this XY order clearer, please let us know.

Sebastien