Open Microscopy Environment

I was able to create an H5 file but now I want to link the table to the image file. How do I do it? I kind of last because FileAnnotation is an abstract class.

All the omero.model classes generated by Ice are abstract, but for all of them there is a concrete subclass ending with an "I".

Code: Select all

image = omero.model.ImageI(imageID, False)
fileAnnotation = omero.model.FileAnnotationI()
annotationLink = omero.model.ImageAnnotationLinkI()
annotationLink.link(image, fileAnnotation)
fileAnnotation.file = omero.model.OriginalFileI(fileID, False)

annotationLink = updateServicePrx.saveAndReturnObject(annotationLink)



Cheers,
~Josh

Got it working. Thanks. Is there a way of getting the whole table as a numpy array?

icaoberg wrote:Got it working. Thanks.

Good to hear.

icaoberg wrote: Is there a way of getting the whole table as a numpy array?

Not on the client-side at the moment, no. You might take a look at the omero.columns module which handles the backend mapping to numpy and HDF5. If there's anything you can re-use, then we can go about making it more generally usable.

~Josh.