Open Microscopy Environment

Hi, I got two question to build insight.

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./build.py && ./build.py release-clients

Seems to work fine,

However the resulting jar files seems to have some issue:

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dist$ pwd
/home/axel/om/openmicroscopy-axel/components/insight/OUT/dist
dist$ java -Xms256000000 -Xmx1024000000 -jar omero.insight.jar

Exception: java.lang.NoClassDefFoundError thrown from the UncaughtExceptionHandler in thread "Initializer"
dist$


I also tried to only build insight following this guide:

http://www.openmicroscopy.org/site/supp ... uting.html

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/home/axel/om/openmicroscopy-axel/components/insight/build
build$ java build
Error: Could not find or load main class build


Which is as far I understood "java" command is no wonder, shouldn't this be "ant" or something?

Hi,

thanks for pointing this out.

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java build

won't work any more, we have to update the documentation with respect to this. Yes, the recommended way is to use the Python script on the top level directory.

Launching the Insight jar from the command line is a bit tricky. You need to pass on the classpath, the relative path to the config (container.xml) and the path to the application directory.
In your case this should work (assuming you are in the OUT/dist directory:

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java -cp "*:../app/libs/*" org.openmicroscopy.shoola.Main container.xml /home/axel/om/openmicroscopy-axel/components/insight/OUT/app

Regards,
Dominik

I don't know what your testing workflow is, after executing the python scripts once to build all dependencies I ended up running

in "components/insight/build/": "ant compile"
and in: "components/insight/OUT/app/compiled"
"cp -r ../config ." (only needed once)
"java -classpath .:../libs/\* -Xms256000000 -Xmx1024000000 org.openmicroscopy.shoola.Main"

I think the easiest way for building insight is running the top-level python script pointing it to the insight build.xml:

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./build.py -f components/insight/build.xml

Launching insight from the command line then depends from which directory you're launching it, so that it can find the config files, either copying them or setting the 'app' directory via command line argument, should work both, whatever you prefer.

By the way, with the upcoming 5.2.1 release (should be just a couple of hours now) we're also going to update/fix the "Contributing to OMERO.insight" page you were referring to.

Regards,
Dominik