The AVI compression error in the import command
Posted: Wed Sep 28, 2011 1:52 am
I tried to import an AVI file to the OMERO server using "omero import" command and I received the compression format error. I found it works fine with the uncompressed AVI file. However, the uncompressed AVI occupied too much space. is there any compression format accepted by the OMERO?
Reference:
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2011-09-27 21:44:18,303 1 [ main] WARN ome.formats.importer.util.IniFileLoader - Creating temporary ini file: /home/wong/omero/tmp/omero_wong/23076@iwasa2/.omero.importer1871204171931223059ini
2011-09-27 21:44:18,313 11 [ main] INFO ome.formats.importer.ImportConfig - OMERO Version: Beta-4.1.2-DE V
2011-09-27 21:44:21,555 3253 [ main] WARN ome.system.UpgradeCheck - UPGRADE AVAILABLE:Please upg rade to Beta-4.3.1 See http://trac.openmicroscopy.org.uk/omero for the latest version
2011-09-27 21:44:21,556 3254 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 4.1.1 re vision: ${svn.revision} date: 23 March 2011
2011-09-27 21:44:21,565 3263 [ main] INFO ome.formats.importer.ImportConfig - Debugging at level 0
2011-09-27 21:44:21,832 3530 [ main] DEBUG ome.formats.importer.ImportCandidates - Depth: 4
2011-09-27 21:44:21,833 3531 [ main] DEBUG ome.formats.importer.cli.ErrorHandler - SCANNING: Depth:0 Num: 1 Tot: n/a File: 8079.avi
2011-09-27 21:44:21,901 3599 [ main] ERROR ome.formats.importer.cli.ErrorHandler - FILE_EXCEPTION: /RAID10/home /wong/animation/8079.avi
loci.formats.FormatException: Unsupported compression type 1195724877
at loci.formats.in.AVIReader.initFile(AVIReader.java:380)
at loci.formats.FormatReader.setId(FormatReader.java:913)
at loci.formats.ImageReader.setId(ImageReader.java:596)
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448)
at loci.formats.ChannelFiller.setId(ChannelFiller.java:179)
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448)
at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205)
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448)
at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:337)
at ome.formats.importer.ImportCandidates.handleFile(ImportCandidates.java:431)
at ome.formats.importer.ImportCandidates.execute(ImportCandidates.java:310)
at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:209)
at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:162)
at ome.formats.importer.cli.CommandLineImporter.<init>(CommandLineImporter.java:72)
at ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:405)
2011-09-27 21:44:21,904 3602 [ main] DEBUG ome.formats.importer.cli.ErrorHandler - SCANNING: Depth:0 Num: 1 Tot: 1 File: 8079.avi
2011-09-27 21:44:21,905 3603 [ main] INFO ome.formats.importer.ImportCandidates - 1 file(s) parsed into 0 grou ps with 1 call(s) to setId in 65ms. (73ms total) [0 unknowns]
No imports due to errors!
2011-09-27 21:44:22,400 4098 [ main] DEBUG ome.formats.OMEROMetadataStoreClient - Logout called, shutting keep alive down.
2011-09-27 21:44:22,401 4099 [ main] DEBUG ome.formats.OMEROMetadataStoreClient - keepalive shut down.
2011-09-27 21:44:22,401 4099 [ main] DEBUG ome.formats.OMEROMetadataStoreClient - closing client session.
2011-09-27 21:44:22,403 4101 [ main] DEBUG ome.formats.OMEROMetadataStoreClient - client closed.
Reference:
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2011-09-27 21:44:18,303 1 [ main] WARN ome.formats.importer.util.IniFileLoader - Creating temporary ini file: /home/wong/omero/tmp/omero_wong/23076@iwasa2/.omero.importer1871204171931223059ini
2011-09-27 21:44:18,313 11 [ main] INFO ome.formats.importer.ImportConfig - OMERO Version: Beta-4.1.2-DE V
2011-09-27 21:44:21,555 3253 [ main] WARN ome.system.UpgradeCheck - UPGRADE AVAILABLE:Please upg rade to Beta-4.3.1 See http://trac.openmicroscopy.org.uk/omero for the latest version
2011-09-27 21:44:21,556 3254 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 4.1.1 re vision: ${svn.revision} date: 23 March 2011
2011-09-27 21:44:21,565 3263 [ main] INFO ome.formats.importer.ImportConfig - Debugging at level 0
2011-09-27 21:44:21,832 3530 [ main] DEBUG ome.formats.importer.ImportCandidates - Depth: 4
2011-09-27 21:44:21,833 3531 [ main] DEBUG ome.formats.importer.cli.ErrorHandler - SCANNING: Depth:0 Num: 1 Tot: n/a File: 8079.avi
2011-09-27 21:44:21,901 3599 [ main] ERROR ome.formats.importer.cli.ErrorHandler - FILE_EXCEPTION: /RAID10/home /wong/animation/8079.avi
loci.formats.FormatException: Unsupported compression type 1195724877
at loci.formats.in.AVIReader.initFile(AVIReader.java:380)
at loci.formats.FormatReader.setId(FormatReader.java:913)
at loci.formats.ImageReader.setId(ImageReader.java:596)
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448)
at loci.formats.ChannelFiller.setId(ChannelFiller.java:179)
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448)
at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205)
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448)
at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:337)
at ome.formats.importer.ImportCandidates.handleFile(ImportCandidates.java:431)
at ome.formats.importer.ImportCandidates.execute(ImportCandidates.java:310)
at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:209)
at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:162)
at ome.formats.importer.cli.CommandLineImporter.<init>(CommandLineImporter.java:72)
at ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:405)
2011-09-27 21:44:21,904 3602 [ main] DEBUG ome.formats.importer.cli.ErrorHandler - SCANNING: Depth:0 Num: 1 Tot: 1 File: 8079.avi
2011-09-27 21:44:21,905 3603 [ main] INFO ome.formats.importer.ImportCandidates - 1 file(s) parsed into 0 grou ps with 1 call(s) to setId in 65ms. (73ms total) [0 unknowns]
No imports due to errors!
2011-09-27 21:44:22,400 4098 [ main] DEBUG ome.formats.OMEROMetadataStoreClient - Logout called, shutting keep alive down.
2011-09-27 21:44:22,401 4099 [ main] DEBUG ome.formats.OMEROMetadataStoreClient - keepalive shut down.
2011-09-27 21:44:22,401 4099 [ main] DEBUG ome.formats.OMEROMetadataStoreClient - closing client session.
2011-09-27 21:44:22,403 4101 [ main] DEBUG ome.formats.OMEROMetadataStoreClient - client closed.