We're Hiring!

omero importer problems

General user discussion about using the OMERO platform to its fullest. Please ask new questions at https://forum.image.sc/tags/omero
Please note:
Historical discussions about OMERO. Please look for and ask new questions at https://forum.image.sc/tags/omero

There are workflow guides for various OMERO functions on our help site - http://help.openmicroscopy.org

You should find answers to any basic questions about using the clients there.

omero importer problems

Postby genetics_lab » Wed Aug 11, 2010 6:15 pm

I used bioformats to convert tif images to the ome.tif format. When I try to use the omero importer, I can't import the ome.tif files. I am able to import the .tif files, but the error I get when trying to import the ome.tif files is:

java.lang.IllegalArgumentException: Invalid series: 0.

I should say that I am using omero server version 4.1.1 and the newest version of bioformats. Perhaps there is a backwards compatibility issue?
genetics_lab
 
Posts: 7
Joined: Tue Jul 20, 2010 10:15 pm

Re: omero importer problems

Postby cxallan » Thu Aug 12, 2010 7:53 pm

If you can get us the file we can try and help as best we can. You can do so here:

http://qa.openmicroscopy.org.uk/qa/upload/
cxallan
Site Admin
 
Posts: 509
Joined: Fri May 01, 2009 8:07 am

Re: omero importer problems

Postby genetics_lab » Thu Aug 12, 2010 9:55 pm

I just uploaded the images.

The thing that is puzzling to me is that the .tif files import just fine, but when I convert them to ome.tif using bioformats they do not import.

Thanks.
genetics_lab
 
Posts: 7
Joined: Tue Jul 20, 2010 10:15 pm

Re: omero importer problems

Postby cxallan » Fri Aug 13, 2010 9:01 am

Thanks. We'll take a look.
cxallan
Site Admin
 
Posts: 509
Joined: Fri May 01, 2009 8:07 am


Return to User Discussion

Who is online

Users browsing this forum: No registered users and 1 guest