Disk Space

[ahar]

Hi,
I'm running the server on Windows with the binary repository on a mapped network drive and had to set the omero.data.dir in UNC format to get the OMERO.master service to start correctly. Since doing that the Disk Space display in the Insight client has stopped working.
This is the error I get in the client:

Code: Select all

java.lang.Exception: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
Cannot retrieve the free space
    at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:729)
    at org.openmicroscopy.shoola.env.data.OMEROGateway.getFreeSpace(OMEROGateway.java:3837)
    at org.openmicroscopy.shoola.env.data.AdminServiceImpl.getSpace(AdminServiceImpl.java:141)
    at org.openmicroscopy.shoola.env.data.views.calls.AdminLoader$1.doCall(AdminLoader.java:98)
    at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:145)
    at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
    at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
    at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
    at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
    at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
    at java.lang.Thread.run(Unknown Source)
Caused by: omero.ResourceError
    serverStackTrace = "ome.conditions.ResourceError

                            at ome.logic.RepositoryInfoImpl.getFreeSpaceInKilobytes(RepositoryInfoImpl.java:164)

                            at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

                            at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)

                            at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)

                            at java.lang.reflect.Method.invoke(Unknown Source)

                            at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)

                            at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)

                            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)

                            at ome.security.basic.EventHandler.invoke(EventHandler.java:144)

                            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)

                            at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111)

                            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)

                            at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)

                            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)

                            at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:222)

                            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)

                            at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)

                            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)

                            at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)

                            at $Proxy68.getFreeSpaceInKilobytes(Unknown Source)

                            at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

                            at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)

                            at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)

                            at java.lang.reflect.Method.invoke(Unknown Source)

                            at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)

                            at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)

                            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)

                            at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83)

                            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)

                            at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:40)

                            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)

                            at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)

                            at $Proxy68.getFreeSpaceInKilobytes(Unknown Source)

                            at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

                            at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)

                            at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)

                            at java.lang.reflect.Method.invoke(Unknown Source)

                            at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179)

                            at ome.services.throttling.Callback.run(Callback.java:56)

                            at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)

                            at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:132)

                            at ome.services.blitz.impl.RepositoryInfoI.getFreeSpaceInKilobytes_async(RepositoryInfoI.java:42)

                            at omero.api._IRepositoryInfoTie.getFreeSpaceInKilobytes_async(_IRepositoryInfoTie.java:64)

                            at omero.api._IRepositoryInfoDisp.___getFreeSpaceInKilobytes(_IRepositoryInfoDisp.java:132)

                            at omero.api._IRepositoryInfoDisp.__dispatch(_IRepositoryInfoDisp.java:218)

                            at IceInternal.Incoming.invoke(Incoming.java:159)

                            at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)

                            at Ice.ConnectionI.message(ConnectionI.java:972)

                            at IceInternal.ThreadPool.run(ThreadPool.java:577)

                            at IceInternal.ThreadPool.access$100(ThreadPool.java:12)

                            at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

                        "
    serverExceptionClass = "ome.conditions.ResourceError"
    message = ""
    at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
    at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
    at java.lang.reflect.Constructor.newInstance(Unknown Source)
    at java.lang.Class.newInstance0(Unknown Source)
    at java.lang.Class.newInstance(Unknown Source)
    at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
    at IceInternal.BasicStream.throwException(BasicStream.java:1632)
    at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
    at omero.api._IRepositoryInfoDelM.getFreeSpaceInKilobytes(_IRepositoryInfoDelM.java:31)
    at omero.api.IRepositoryInfoPrxHelper.getFreeSpaceInKilobytes(IRepositoryInfoPrxHelper.java:48)
    at omero.api.IRepositoryInfoPrxHelper.getFreeSpaceInKilobytes(IRepositoryInfoPrxHelper.java:20)
    at org.openmicroscopy.shoola.env.data.OMEROGateway.getFreeSpace(OMEROGateway.java:3835)
    ... 9 more

    at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.showErrorDialog(UserNotifierImpl.java:158)
    at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyError(UserNotifierImpl.java:245)
    at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyError(UserNotifierImpl.java:217)
    at org.openmicroscopy.shoola.agents.metadata.EditorLoader.handleException(EditorLoader.java:161)
    at org.openmicroscopy.shoola.env.data.events.DSCallAdapter.eventFired(DSCallAdapter.java:84)
    at org.openmicroscopy.shoola.env.data.views.BatchCallMonitor$1.run(BatchCallMonitor.java:124)
    at java.awt.event.InvocationEvent.dispatch(Unknown Source)
    at java.awt.EventQueue.dispatchEvent(Unknown Source)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
    at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.run(Unknown Source)


It was also necessary to set the OMERO.master service to log on as a domain user with permisions on the mapped drive in order to get it to work if that matters.
Thanks

[jmoore]

Could you possibly attach your var\log\Blitz-0.log? The client exception is not showing exactly what went wrong on the server.

Thanks,
~Josh

[ahar]

Hi,
Here's the log.
I've noticed the log contains a mention of "OMEROV" which was a folder name I used at some point while I was messing around trying to get the mapped network drive location to work. I've since removed that folder and set it back to just "OMERO". Is that part of the problem or is it to do with specifying the repository location in UNC format?
Thanks

Code: Select all

2010-10-01 12:43:52,552 INFO  [                ome.services.blitz.Entry] (      main) Creating OMERO.blitz. Please wait...
2010-10-01 12:43:54,193 INFO  [ng.ShutdownSafeEhcacheManagerFactoryBean] (      main) Initializing EHCache CacheManager
2010-10-01 12:43:57,147 INFO  [  ome.services.fulltext.FullTextAnalyzer] (      main) Initialized FullTextAnalyzer
2010-10-01 12:43:57,272 WARN  [ch.engine.DocumentBuilderContainedEntity] (      main) @DocumentId specified on an entity which

is not indexed by itself. Annotation gets ignored. Use @Field instead.
2010-10-01 12:43:57,334 WARN  [ch.engine.DocumentBuilderContainedEntity] (      main) @DocumentId specified on an entity which

is not indexed by itself. Annotation gets ignored. Use @Field instead.
2010-10-01 12:43:57,365 WARN  [ch.engine.DocumentBuilderContainedEntity] (      main) @DocumentId specified on an entity which

is not indexed by itself. Annotation gets ignored. Use @Field instead.
2010-10-01 12:43:57,522 WARN  [ch.engine.DocumentBuilderContainedEntity] (      main) @DocumentId specified on an entity which

is not indexed by itself. Annotation gets ignored. Use @Field instead.
2010-10-01 12:43:57,537 WARN  [ch.engine.DocumentBuilderContainedEntity] (      main) @DocumentId specified on an entity which

is not indexed by itself. Annotation gets ignored. Use @Field instead.
2010-10-01 12:43:57,553 WARN  [ch.engine.DocumentBuilderContainedEntity] (      main) @DocumentId specified on an entity which

is not indexed by itself. Annotation gets ignored. Use @Field instead.
2010-10-01 12:43:57,553 WARN  [ch.engine.DocumentBuilderContainedEntity] (      main) @DocumentId specified on an entity which

is not indexed by itself. Annotation gets ignored. Use @Field instead.
2010-10-01 12:43:57,600 WARN  [ch.engine.DocumentBuilderContainedEntity] (      main) @DocumentId specified on an entity which

is not indexed by itself. Annotation gets ignored. Use @Field instead.
2010-10-01 12:43:57,709 WARN  [ch.engine.DocumentBuilderContainedEntity] (      main) @DocumentId specified on an entity which

is not indexed by itself. Annotation gets ignored. Use @Field instead.
2010-10-01 12:44:01,163 INFO  [        ome.services.db.DatabaseIdentity] (      main) Using LSID format:

urn:lsid:export.openmicroscopy.org:%s:efb469fa-9261-4aaa-b905-393b921206bc_%s%s
2010-10-01 12:44:01,241 INFO  [    ome.services.fulltext.FullTextThread] (      main) Initializing Full-Text Indexer
2010-10-01 12:44:01,257 INFO  [          ome.services.util.DBPatchCheck] (      main) Verified database patch: OMERO4.2__0
2010-10-01 12:44:01,944 INFO  [    ome.services.util.ServerVersionCheck] (      main)

-------------------------------------------------
2010-10-01 12:44:01,944 INFO  [    ome.services.util.ServerVersionCheck] (      main) OMERO Version: Beta-4.2.0-r7571-b29

Ready.
2010-10-01 12:44:01,944 INFO  [    ome.services.util.ServerVersionCheck] (      main)

-------------------------------------------------
2010-10-01 12:44:11,961 ERROR [                 ome.system.UpgradeCheck] (      main) Error reading from url:

http://upgrade.openmicroscopy.org.uk?version=Beta-4.2.0-r7571-b29;os.name=Windows+Vista;os.arch=x86;os.version=6.0;java.runtime

.version=1.6.0_21-b06;java.vm.vendor=Sun+Microsystems+Inc. "connect timed out"
2010-10-01 12:44:11,961 INFO  [    ome.tools.hibernate.ExtendedMetadata] (      main) Calculating ExtendedMetadata...
2010-10-01 12:44:11,992 INFO  [.services.scheduler.SchedulerFactoryBean] (      main) Starting Quartz Scheduler now
2010-10-01 12:44:12,195 INFO  [e.services.blitz.util.BlitzConfiguration] (      main) Initializing Ice.Communicator
2010-10-01 12:44:12,555 INFO  [            ome.services.blitz.fire.Ring] (      main) Checking cluster
2010-10-01 12:44:12,586 INFO  [        ome.services.blitz.fire.Registry] (      main) Found 0 cluster node(s) : []
2010-10-01 12:44:12,586 INFO  [            ome.services.blitz.fire.Ring] (      main) Got 0 cluster uuids : []
2010-10-01 12:44:12,586 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork --

ome.services.blitz.fire.Ring.getManagerList
2010-10-01 12:44:12,586 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null,

ome.tools.spring.InternalServiceFactory@161f888]
2010-10-01 12:44:12,648 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:   

user=0,group=0,event=null(Internal),sess=e7d49bfd-b9a5-42d0-88dc-ed967b81df69
2010-10-01 12:44:13,039 INFO  [                 org.perf4j.TimingLogger] (      main) start[1285933452586] time[453]

tag[omero.call.success]
2010-10-01 12:44:13,039 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:   

(a119e800-995c-47fd-b3ec-0e11aece139a)
2010-10-01 12:44:13,039 INFO  [            ome.services.blitz.fire.Ring] (      main) Purging node:

a119e800-995c-47fd-b3ec-0e11aece139a
2010-10-01 12:44:13,086 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork --

ome.services.blitz.fire.Ring.executeUpdate - set closed = now()
2010-10-01 12:44:13,086 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null,

ome.tools.spring.InternalServiceFactory@2083d]
2010-10-01 12:44:13,258 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:   

user=0,group=0,event=1951(Internal),sess=e7d49bfd-b9a5-42d0-88dc-ed967b81df69
2010-10-01 12:44:13,289 INFO  [                 org.perf4j.TimingLogger] (      main) start[1285933453086] time[203]

tag[omero.call.success]
2010-10-01 12:44:13,289 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    0
2010-10-01 12:44:13,289 INFO  [            ome.services.blitz.fire.Ring] (      main) Removed 0 entries with value

a119e800-995c-47fd-b3ec-0e11aece139a
2010-10-01 12:44:13,289 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork --

ome.services.blitz.fire.Ring.setManagerDown
2010-10-01 12:44:13,289 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null,

ome.tools.spring.InternalServiceFactory@171ef98]
2010-10-01 12:44:13,305 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:   

user=0,group=0,event=1952(Internal),sess=e7d49bfd-b9a5-42d0-88dc-ed967b81df69
2010-10-01 12:44:13,305 INFO  [                 org.perf4j.TimingLogger] (      main) start[1285933453289] time[16]

tag[omero.call.success]
2010-10-01 12:44:13,305 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    1
2010-10-01 12:44:13,305 INFO  [            ome.services.blitz.fire.Ring] (      main) Removed manager:

a119e800-995c-47fd-b3ec-0e11aece139a
2010-10-01 12:44:13,305 INFO  [            ome.services.blitz.fire.Ring] (      main) handleRingShutdown:

a119e800-995c-47fd-b3ec-0e11aece139a
2010-10-01 12:44:13,305 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork --

ome.services.blitz.fire.Ring.addManager
2010-10-01 12:44:13,305 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null,

ome.tools.spring.InternalServiceFactory@472e76]
2010-10-01 12:44:13,320 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:   

user=0,group=0,event=1953(Internal),sess=e7d49bfd-b9a5-42d0-88dc-ed967b81df69
2010-10-01 12:44:13,320 INFO  [       ome.security.basic.CurrentDetails] (      main) Adding log:INSERT,class

ome.model.meta.Node,1851
2010-10-01 12:44:13,352 INFO  [                 org.perf4j.TimingLogger] (      main) start[1285933453305] time[47]

tag[omero.call.success]
2010-10-01 12:44:13,367 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    ome.model.meta.Node:Id_1851
2010-10-01 12:44:13,367 INFO  [        ome.services.blitz.fire.Registry] (      main) Added

ClusterNode/e7d49bfd-b9a5-42d0-88dc-ed967b81df69 to registry
2010-10-01 12:44:13,414 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork --

ome.services.scripts.ScriptRepoHelper.loadAll(true)
2010-10-01 12:44:13,414 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null,

ome.tools.spring.InternalServiceFactory@80bc28]
2010-10-01 12:44:13,430 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:   

user=0,group=0,event=1954(Internal),sess=e7d49bfd-b9a5-42d0-88dc-ed967b81df69
2010-10-01 12:44:13,539 INFO  [                 org.perf4j.TimingLogger] (      main) start[1285933453414] time[125]

tag[omero.call.success]
2010-10-01 12:44:13,539 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:   

(ome.model.core.OriginalFile:Id_1, ome.model.core.OriginalFile:Id_2, ome.model.core.OriginalFile:Id_3, ... 8 more)
2010-10-01 12:44:13,570 INFO  [.services.blitz.repo.AbstractRepositoryI] (      main) Initializing repository in

\\\\pelican\\omero_repository\\OMERO
2010-10-01 12:44:13,570 INFO  [.services.blitz.repo.AbstractRepositoryI] (      main) Initializing repository in

c:\omero_dist\.\lib\scripts
2010-10-01 12:44:13,617 INFO  [        ome.services.util.ServiceHandler] (r_Worker-6)  Executor.doWork --

ome.services.blitz.repo.ScriptRepositoryI.takeover
2010-10-01 12:44:13,617 INFO  [        ome.services.util.ServiceHandler] (r_Worker-6)  Args:    [null,

ome.tools.spring.InternalServiceFactory@6c8255]
2010-10-01 12:44:13,617 INFO  [        ome.services.util.ServiceHandler] (r_Worker-7)  Executor.doWork --

ome.services.roi.GeomTool.backgroundSynchronization
2010-10-01 12:44:13,617 INFO  [        ome.services.util.ServiceHandler] (r_Worker-7)  Args:    [null,

ome.tools.spring.InternalServiceFactory@42bb13]
2010-10-01 12:44:13,617 INFO  [        ome.services.util.ServiceHandler] (r_Worker-5)  Executor.doWork --

ome.services.blitz.repo.LegacyRepositoryI.takeover
2010-10-01 12:44:13,617 INFO  [        ome.services.util.ServiceHandler] (r_Worker-5)  Args:    [null,

ome.tools.spring.InternalServiceFactory@1961f4]
2010-10-01 12:44:13,649 INFO  [         ome.security.basic.EventHandler] (r_Worker-7)  Auth:   

user=0,group=0,event=1955(Internal),sess=e7d49bfd-b9a5-42d0-88dc-ed967b81df69
2010-10-01 12:44:13,664 INFO  [    ome.services.blitz.util.CheckAllJobs] (  Thread-7) Waiting 120 secs. for callbacks
2010-10-01 12:44:13,664 INFO  [                ome.services.blitz.Entry] (      main) OMERO.blitz now accepting connections.
2010-10-01 12:44:13,664 INFO  [         ome.security.basic.EventHandler] (r_Worker-5)  Auth:   

user=0,group=0,event=1956(Internal),sess=e7d49bfd-b9a5-42d0-88dc-ed967b81df69
2010-10-01 12:44:13,680 INFO  [.services.blitz.repo.AbstractRepositoryI] (r_Worker-5) Opened repository OMEROV

(uuid=cd31ec2c-d010-401f-a641-eb0c1fb5d631)
2010-10-01 12:44:13,727 INFO  [                 org.perf4j.TimingLogger] (r_Worker-7) start[1285933453617] time[110]

tag[omero.call.success]
2010-10-01 12:44:13,727 INFO  [        ome.services.util.ServiceHandler] (r_Worker-7)  Rslt:    null
2010-10-01 12:44:13,727 INFO  [        ome.services.blitz.fire.Registry] (r_Worker-5) Updated

InternalRepository-cd31ec2c-d010-401f-a641-eb0c1fb5d631 in registry
2010-10-01 12:44:13,742 INFO  [         ome.security.basic.EventHandler] (r_Worker-6)  Auth:   

user=0,group=0,event=1957(Internal),sess=e7d49bfd-b9a5-42d0-88dc-ed967b81df69
2010-10-01 12:44:13,742 INFO  [        ome.services.blitz.fire.Registry] (r_Worker-5) Updated

PublicRepository-cd31ec2c-d010-401f-a641-eb0c1fb5d631 in registry
2010-10-01 12:44:13,742 INFO  [.services.blitz.repo.AbstractRepositoryI] (r_Worker-6) Opened repository scripts

(uuid=ScriptRepo)
2010-10-01 12:44:13,742 INFO  [.services.blitz.repo.AbstractRepositoryI] (r_Worker-5) Repository now active
2010-10-01 12:44:13,758 INFO  [                 org.perf4j.TimingLogger] (r_Worker-5) start[1285933453617] time[141]

tag[omero.call.success]
2010-10-01 12:44:13,758 INFO  [        ome.services.util.ServiceHandler] (r_Worker-5)  Rslt:   

ome.model.core.OriginalFile:Id_51
2010-10-01 12:44:13,758 INFO  [        ome.services.util.ServiceHandler] (r_Worker-5)  Executor.doWork --

ome.services.blitz.repo.LegacyRepositoryI.getDescription(51)
2010-10-01 12:44:13,758 INFO  [        ome.services.util.ServiceHandler] (r_Worker-5)  Args:    [null,

ome.tools.spring.InternalServiceFactory@12f5f0d]
2010-10-01 12:44:13,758 INFO  [         ome.security.basic.EventHandler] (r_Worker-5)  Auth:   

user=0,group=0,event=null(Internal),sess=e7d49bfd-b9a5-42d0-88dc-ed967b81df69
2010-10-01 12:44:13,758 INFO  [        ome.services.blitz.fire.Registry] (r_Worker-6) Updated InternalRepository-ScriptRepo in

registry
2010-10-01 12:44:13,758 INFO  [        ome.services.blitz.fire.Registry] (r_Worker-6) Updated PublicRepository-ScriptRepo in

registry
2010-10-01 12:44:13,758 INFO  [.services.blitz.repo.AbstractRepositoryI] (r_Worker-6) Repository now active
2010-10-01 12:44:13,758 INFO  [                 org.perf4j.TimingLogger] (r_Worker-6) start[1285933453617] time[141]

tag[omero.call.success]
2010-10-01 12:44:13,758 INFO  [        ome.services.util.ServiceHandler] (r_Worker-6)  Rslt:   

ome.model.core.OriginalFile:Id_13
2010-10-01 12:44:13,758 INFO  [        ome.services.util.ServiceHandler] (r_Worker-6)  Executor.doWork --

ome.services.blitz.repo.ScriptRepositoryI.getDescription(13)
2010-10-01 12:44:13,758 INFO  [        ome.services.util.ServiceHandler] (r_Worker-6)  Args:    [null,

ome.tools.spring.InternalServiceFactory@661a11]
2010-10-01 12:44:13,758 INFO  [         ome.security.basic.EventHandler] (r_Worker-6)  Auth:   

user=0,group=0,event=null(Internal),sess=e7d49bfd-b9a5-42d0-88dc-ed967b81df69
2010-10-01 12:44:13,930 INFO  [                 org.perf4j.TimingLogger] (r_Worker-6) start[1285933453758] time[172]

tag[omero.call.success]
2010-10-01 12:44:13,930 INFO  [        ome.services.util.ServiceHandler] (r_Worker-6)  Rslt:   

ome.model.core.OriginalFile:Id_13
2010-10-01 12:44:13,930 INFO  [                 org.perf4j.TimingLogger] (r_Worker-5) start[1285933453758] time[172]

tag[omero.call.success]
2010-10-01 12:44:13,930 INFO  [        ome.services.util.ServiceHandler] (r_Worker-5)  Rslt:   

ome.model.core.OriginalFile:Id_51
2010-10-01 12:44:22,586 INFO  [        ome.services.util.ServiceHandler] (l.Server-1)  Executor.doWork --

ome.services.sessions.SessionManagerImpl.createSession
2010-10-01 12:44:22,586 INFO  [        ome.services.util.ServiceHandler] (l.Server-1)  Args:    [null,

ome.tools.spring.InternalServiceFactory@1ece626]
2010-10-01 12:44:22,633 INFO  [         ome.security.basic.EventHandler] (l.Server-1)  Auth:   

user=0,group=0,event=1958(Sessions),sess=e7d49bfd-b9a5-42d0-88dc-ed967b81df69
2010-10-01 12:44:22,680 INFO  [       ome.security.basic.CurrentDetails] (l.Server-1) Adding log:INSERT,class

ome.model.meta.Session,3828
2010-10-01 12:44:22,711 INFO  [                 org.perf4j.TimingLogger] (l.Server-1) start[1285933462586] time[125]

tag[omero.call.success]
2010-10-01 12:44:22,711 INFO  [        ome.services.util.ServiceHandler] (l.Server-1)  Rslt:   

(ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, [0, 1], ... 4 more)
2010-10-01 12:44:22,727 INFO  [             ome.services.licenses.Store] (l.Server-1) Acquired license from example license

store.
2010-10-01 12:44:22,727 INFO  [ ome.services.blitz.fire.SessionManagerI] (l.Server-1) Created session

256a5210-cb36-4008-be4f-f0ec48aaf031 for user root
2010-10-01 12:44:22,727 INFO  [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-5) Keep alive:

256a5210-cb36-4008-be4f-f0ec48aaf031
2010-10-01 12:44:22,727 INFO  [    ome.services.blitz.util.CheckAllJobs] (l.Server-8) Received 0 job(s)
2010-10-01 12:44:22,743 INFO  [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-9) Added servant to adapter:

256a5210-cb36-4008-be4f-f0ec48aaf031/1bdb0d61-67ef-4b6e-8864-0481673f10c5omero.grid.SharedResources(omero.grid._SharedResources

Tie@1aa8b42)
2010-10-01 12:44:53,024 INFO  [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-7) Keep alive:

256a5210-cb36-4008-be4f-f0ec48aaf031
2010-10-01 12:44:59,603 INFO  [        ome.services.util.ServiceHandler] (l.Server-3)  Executor.doWork --

ome.services.sessions.SessionManagerImpl.executeCheckPasswordRO(xxxxxx)
2010-10-01 12:44:59,603 INFO  [        ome.services.util.ServiceHandler] (l.Server-3)  Args:    [null,

ome.tools.spring.InternalServiceFactory@e8b5fe]
2010-10-01 12:44:59,603 INFO  [         ome.security.basic.EventHandler] (l.Server-3)  Auth:   

user=0,group=0,event=null(Sessions),sess=e7d49bfd-b9a5-42d0-88dc-ed967b81df69
2010-10-01 12:44:59,665 INFO  [                 org.perf4j.TimingLogger] (l.Server-3) start[1285933499603] time[62]

tag[omero.call.success]
2010-10-01 12:44:59,665 INFO  [        ome.services.util.ServiceHandler] (l.Server-3)  Rslt:    true
2010-10-01 12:44:59,665 INFO  [        ome.services.util.ServiceHandler] (l.Server-6)  Executor.doWork --

ome.services.sessions.SessionManagerImpl.createSession
2010-10-01 12:44:59,665 INFO  [        ome.services.util.ServiceHandler] (l.Server-6)  Args:    [null,

ome.tools.spring.InternalServiceFactory@778590]
2010-10-01 12:44:59,696 INFO  [         ome.security.basic.EventHandler] (l.Server-6)  Auth:   

user=0,group=0,event=1959(Sessions),sess=e7d49bfd-b9a5-42d0-88dc-ed967b81df69
2010-10-01 12:44:59,728 INFO  [       ome.security.basic.CurrentDetails] (l.Server-6) Adding log:INSERT,class

ome.model.meta.Session,3829
2010-10-01 12:44:59,743 INFO  [                 org.perf4j.TimingLogger] (l.Server-6) start[1285933499665] time[78]

tag[omero.call.success]
2010-10-01 12:44:59,743 INFO  [        ome.services.util.ServiceHandler] (l.Server-6)  Rslt:   

(ome.model.meta.Experimenter:Id_52, ome.model.meta.ExperimenterGroup:Id_54, [54, 1], ... 4 more)
2010-10-01 12:44:59,743 INFO  [             ome.services.licenses.Store] (l.Server-6) Acquired license from example license

store.
2010-10-01 12:44:59,743 INFO  [ ome.services.blitz.fire.SessionManagerI] (l.Server-6) Created session

20ac74a0-3bbe-4fbd-9f4a-4cb0ea9bb9a6 for user xxxxxx
2010-10-01 12:45:00,103 INFO  [ ome.services.blitz.fire.SessionManagerI] (r_Worker-9) Performing requestHeartbeats
2010-10-01 12:45:00,118 INFO  [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-1) Added servant to adapter:

20ac74a0-3bbe-4fbd-9f4a-4cb0ea9bb9a6/faa00d74-a112-4a20-894d-3445750ed1d4omero.api.IConfig(omero.api._IConfigTie@3a71ed)
2010-10-01 12:45:00,134 INFO  [        ome.services.util.ServiceHandler] (l.Server-4)  Meth:    interface

ome.api.IConfig.getConfigValue
2010-10-01 12:45:00,134 INFO  [        ome.services.util.ServiceHandler] (l.Server-4)  Args:    [omero.router.insecure]
2010-10-01 12:45:00,149 INFO  [         ome.security.basic.EventHandler] (l.Server-4)  Auth:   

user=52,group=54,event=1960(User),sess=20ac74a0-3bbe-4fbd-9f4a-4cb0ea9bb9a6
2010-10-01 12:45:00,149 INFO  [                 org.perf4j.TimingLogger] (l.Server-4) start[1285933500134] time[15]

tag[omero.call.success]
2010-10-01 12:45:00,149 INFO  [        ome.services.util.ServiceHandler] (l.Server-4)  Rslt:    OMERO.Glacier2/router:tcp -p

4063 -h @omero.host@
2010-10-01 12:45:00,196 INFO  [ ome.services.blitz.fire.SessionManagerI] (l.Server-8) Found session locally:

20ac74a0-3bbe-4fbd-9f4a-4cb0ea9bb9a6
2010-10-01 12:45:00,196 INFO  [ ome.services.blitz.fire.SessionManagerI] (l.Server-8) Rejoining session

20ac74a0-3bbe-4fbd-9f4a-4cb0ea9bb9a6
2010-10-01 12:45:00,228 INFO  [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-2) Added servant to adapter:

20ac74a0-3bbe-4fbd-9f4a-4cb0ea9bb9a6/faa00d74-a112-4a20-894d-3445750ed1d4omero.api.IAdmin(omero.api._IAdminTie@11cac41)
2010-10-01 12:45:00,274 INFO  [        ome.services.util.ServiceHandler] (l.Server-7)  Meth:    interface

ome.api.IAdmin.lookupExperimenter
2010-10-01 12:45:00,274 INFO  [        ome.services.util.ServiceHandler] (l.Server-7)  Args:    [xxxxxx]
2010-10-01 12:45:00,274 INFO  [         ome.security.basic.EventHandler] (l.Server-7)  Auth:   

user=52,group=54,event=1961(User),sess=20ac74a0-3bbe-4fbd-9f4a-4cb0ea9bb9a6
2010-10-01 12:45:00,290 INFO  [                 org.perf4j.TimingLogger] (l.Server-7) start[1285933500274] time[16]

tag[omero.call.success]
2010-10-01 12:45:00,290 INFO  [        ome.services.util.ServiceHandler] (l.Server-7)  Rslt:   

ome.model.meta.Experimenter:Id_52
2010-10-01 12:45:00,353 INFO  [        ome.services.util.ServiceHandler] (l.Server-6)  Meth:    interface

ome.api.IConfig.getVersion
2010-10-01 12:45:00,353 INFO  [        ome.services.util.ServiceHandler] (l.Server-6)  Args:    ()
2010-10-01 12:45:00,368 INFO  [         ome.security.basic.EventHandler] (l.Server-6)  Auth:   

user=52,group=54,event=1962(User),sess=20ac74a0-3bbe-4fbd-9f4a-4cb0ea9bb9a6
2010-10-01 12:45:00,368 INFO  [                 org.perf4j.TimingLogger] (l.Server-6) start[1285933500353] time[15]

tag[omero.call.success]
2010-10-01 12:45:00,368 INFO  [        ome.services.util.ServiceHandler] (l.Server-6)  Rslt:    4.2.0
2010-10-01 12:45:00,384 INFO  [        ome.services.util.ServiceHandler] (l.Server-0)  Meth:    interface

ome.api.IAdmin.lookupLdapAuthExperimenter
2010-10-01 12:45:00,384 INFO  [        ome.services.util.ServiceHandler] (l.Server-0)  Args:    [52]
2010-10-01 12:45:00,399 INFO  [         ome.security.basic.EventHandler] (l.Server-0)  Auth:   

user=52,group=54,event=1963(User),sess=20ac74a0-3bbe-4fbd-9f4a-4cb0ea9bb9a6
2010-10-01 12:45:00,399 INFO  [                 org.perf4j.TimingLogger] (l.Server-0) start[1285933500384] time[15]

tag[omero.call.success]
2010-10-01 12:45:00,399 INFO  [        ome.services.util.ServiceHandler] (l.Server-0)  Rslt:    cn=xxxxxx

xxxxxxx,ou=xxxxxx,dc=xxxx,dc=xx,dc=xxx,dc=xx,dc=xx
2010-10-01 12:45:00,415 INFO  [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-1) Added servant to adapter:

20ac74a0-3bbe-4fbd-9f4a-4cb0ea9bb9a6/faa00d74-a112-4a20-894d-3445750ed1d4omero.api.IQuery(omero.api._IQueryTie@663731)
2010-10-01 12:45:00,431 INFO  [        ome.services.util.ServiceHandler] (l.Server-4)  Meth:    interface

ome.api.IQuery.findAllByQuery
2010-10-01 12:45:00,431 INFO  [        ome.services.util.ServiceHandler] (l.Server-4)  Args:    [select distinct g from

ExperimenterGroup as g join fetch g.groupExperimenterMap as map join fetch map.parent e left outer join fetch map.child u left

outer join fetch u.groupExperimenterMap m2 left outer join fetch m2.parent p where g.id in   (select m.parent from

GroupExperimenterMap m   where m.child.id = :id ), ome.parameters.Parameters@12e0415]
2010-10-01 12:45:00,431 INFO  [         ome.security.basic.EventHandler] (l.Server-4)  Auth:   

user=52,group=54,event=null(User),sess=20ac74a0-3bbe-4fbd-9f4a-4cb0ea9bb9a6
2010-10-01 12:45:00,493 INFO  [                 org.perf4j.TimingLogger] (l.Server-4) start[1285933500431] time[62]

tag[omero.call.success]
2010-10-01 12:45:00,493 INFO  [        ome.services.util.ServiceHandler] (l.Server-4)  Rslt:   

(ome.model.meta.ExperimenterGroup:Id_1, ome.model.meta.ExperimenterGroup:Id_54)
2010-10-01 12:45:01,774 INFO  [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-5) Added servant to adapter:

20ac74a0-3bbe-4fbd-9f4a-4cb0ea9bb9a6/faa00d74-a112-4a20-894d-3445750ed1d4omero.api.IContainer(omero.api._IContainerTie@1377ac0)
2010-10-01 12:45:01,821 INFO  [        ome.services.util.ServiceHandler] (l.Server-8)  Meth:    interface

ome.api.IContainer.loadContainerHierarchy
2010-10-01 12:45:01,821 INFO  [        ome.services.util.ServiceHandler] (l.Server-8)  Args:    [class

ome.model.containers.Project, (), ome.parameters.Parameters@abab54]
2010-10-01 12:45:01,821 INFO  [         ome.security.basic.EventHandler] (l.Server-8)  Auth:   

user=52,group=54,event=null(User),sess=20ac74a0-3bbe-4fbd-9f4a-4cb0ea9bb9a6
2010-10-01 12:45:01,853 INFO  [                 org.perf4j.TimingLogger] (l.Server-8) start[1285933501821] time[32]

tag[omero.call.success]
2010-10-01 12:45:01,853 INFO  [        ome.services.util.ServiceHandler] (l.Server-8)  Rslt:    ()
2010-10-01 12:45:06,712 INFO  [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-9) Added servant to adapter:

20ac74a0-3bbe-4fbd-9f4a-4cb0ea9bb9a6/faa00d74-a112-4a20-894d-3445750ed1d4omero.api.IMetadata(omero.api._IMetadataTie@f824b7)
2010-10-01 12:45:06,743 INFO  [        ome.services.util.ServiceHandler] (l.Server-2)  Meth:    interface

ome.api.IMetadata.loadAnnotations
2010-10-01 12:45:06,743 INFO  [        ome.services.util.ServiceHandler] (l.Server-2)  Args:    [class

ome.model.meta.Experimenter, (52), (ome.model.annotations.FileAnnotation), (), ome.parameters.Parameters@161091e]
2010-10-01 12:45:06,743 INFO  [         ome.security.basic.EventHandler] (l.Server-2)  Auth:   

user=52,group=54,event=null(User),sess=20ac74a0-3bbe-4fbd-9f4a-4cb0ea9bb9a6
2010-10-01 12:45:06,759 INFO  [                 org.perf4j.TimingLogger] (l.Server-2) start[1285933506743] time[16]

tag[omero.call.success]
2010-10-01 12:45:06,759 INFO  [        ome.services.util.ServiceHandler] (l.Server-2)  Rslt:    {52=()}
2010-10-01 12:45:09,712 INFO  [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-7) Added servant to adapter:

20ac74a0-3bbe-4fbd-9f4a-4cb0ea9bb9a6/faa00d74-a112-4a20-894d-3445750ed1d4omero.api.IRepositoryInfo(omero.api._IRepositoryInfoTi

e@21a44e)
2010-10-01 12:45:09,728 INFO  [        ome.services.util.ServiceHandler] (l.Server-3)  Meth:    interface

ome.api.IRepositoryInfo.getFreeSpaceInKilobytes
2010-10-01 12:45:09,728 INFO  [        ome.services.util.ServiceHandler] (l.Server-3)  Args:    ()
2010-10-01 12:45:09,759 INFO  [         ome.security.basic.EventHandler] (l.Server-3)  Auth:   

user=52,group=54,event=1964(User),sess=20ac74a0-3bbe-4fbd-9f4a-4cb0ea9bb9a6
2010-10-01 12:45:09,759 ERROR [            ome.logic.RepositoryInfoImpl] (l.Server-3) Error retrieving usage in KB.
java.lang.NullPointerException
    at org.apache.commons.io.FileSystemUtils.freeSpaceWindows(FileSystemUtils.java:217)
    at org.apache.commons.io.FileSystemUtils.freeSpaceOS(FileSystemUtils.java:194)
    at org.apache.commons.io.FileSystemUtils.freeSpaceKb(FileSystemUtils.java:166)
    at ome.tools.FileSystem.free(FileSystem.java:131)
    at ome.logic.RepositoryInfoImpl.getFreeSpaceInKilobytes(RepositoryInfoImpl.java:158)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
    at java.lang.reflect.Method.invoke(Unknown Source)
    at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
    at ome.security.basic.EventHandler.invoke(EventHandler.java:144)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
    at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
    at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
    at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:222)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
    at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
    at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
    at $Proxy68.getFreeSpaceInKilobytes(Unknown Source)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
    at java.lang.reflect.Method.invoke(Unknown Source)
    at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
    at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
    at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:40)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
    at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
    at $Proxy68.getFreeSpaceInKilobytes(Unknown Source)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
    at java.lang.reflect.Method.invoke(Unknown Source)
    at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179)
    at ome.services.throttling.Callback.run(Callback.java:56)
    at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
    at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:132)
    at ome.services.blitz.impl.RepositoryInfoI.getFreeSpaceInKilobytes_async(RepositoryInfoI.java:42)
    at omero.api._IRepositoryInfoTie.getFreeSpaceInKilobytes_async(_IRepositoryInfoTie.java:64)
    at omero.api._IRepositoryInfoDisp.___getFreeSpaceInKilobytes(_IRepositoryInfoDisp.java:132)
    at omero.api._IRepositoryInfoDisp.__dispatch(_IRepositoryInfoDisp.java:218)
    at IceInternal.Incoming.invoke(Incoming.java:159)
    at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
    at Ice.ConnectionI.message(ConnectionI.java:972)
    at IceInternal.ThreadPool.run(ThreadPool.java:577)
    at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
    at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
2010-10-01 12:45:09,759 INFO  [                 org.perf4j.TimingLogger] (l.Server-3) start[1285933509728] time[31]

tag[omero.call.exception]
2010-10-01 12:45:09,759 INFO  [        ome.services.util.ServiceHandler] (l.Server-3)  Excp:    ome.conditions.ResourceError
2010-10-01 12:45:09,821 INFO  [        ome.services.util.ServiceHandler] (l.Server-0)  Meth:    interface

ome.api.IConfig.getVersion
2010-10-01 12:45:09,821 INFO  [        ome.services.util.ServiceHandler] (l.Server-0)  Args:    ()
2010-10-01 12:45:09,821 INFO  [         ome.security.basic.EventHandler] (l.Server-0)  Auth:   

user=52,group=54,event=1965(User),sess=20ac74a0-3bbe-4fbd-9f4a-4cb0ea9bb9a6
2010-10-01 12:45:09,821 INFO  [                 org.perf4j.TimingLogger] (l.Server-0) start[1285933509821] time[0]

tag[omero.call.success]
2010-10-01 12:45:09,821 INFO  [        ome.services.util.ServiceHandler] (l.Server-0)  Rslt:    4.2.0


[jmoore]

Thanks for this, Andrew.

For some value of omero.data.dir, commons-io is throwing an NPE. See https://trac.openmicroscopy.org.uk/omero/ticket/2984

Could you possibly send me the output of:

Code: Select all

bin/omero config get omero.data.dir
echo "client.sf.getConfigService().getConfigValue('omero.data.dir')" | bin/omero shell --login


For the second command, you will need to have first logged in as root:

Code: Select all

bin/omero login root@localhost


Cheers,
~Josh.

[ahar]

Hi,
Hopefully I've done that correctly...
I had to remove bin\ from the second command to get it to run.
Here's what I got:

Code: Select all

C:\omero_dist\bin>omero config get omero.data.dir
\\\\pelican\\omero_repository\\OMERO

C:\omero_dist\bin>echo "client.sf.getConfigService().getConfigValue('omero.data.
dir')" | omero shell --login
ERROR:omero.util.UpgradeCheck:<urlopen error (10060, 'Operation timed out')>
Using session 9fa11cb9-4ff5-4715-8a2b-946f345930f5 (root@localhost). Idle timeou
t: 10.0 min. Current group: system
WARNING: Readline services not available on this platform.
WARNING: Proper color support under MS Windows requires the pyreadline library.
You can find it at:
http://ipython.scipy.org/moin/PyReadline/Intro
Gary's readline needs the ctypes module, from:
http://starship.python.net/crew/theller/ctypes
(Note that ctypes is already part of Python versions 2.5 and newer).

Defaulting color scheme to 'NoColor'
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)

C:\omero_dist\bin\omero in <module>()
    150         sys.exit(2)
    151
--> 152     rv = omero.cli.argv()
    153     sys.exit(rv)
    154 except KeyboardInterrupt, ki:

C:\omero_dist\lib\python\omero\cli.pyc in argv(args)
   1147
   1148         if len(args) > 1:
-> 1149             cli.invoke(args[1:])
   1150             return cli.rv
   1151         else:

C:\omero_dist\lib\python\omero\cli.pyc in invoke(self, line, strict, previous_ar
gs)
    700         try:
    701             line = self.precmd(line)
--> 702             stop = self.onecmd(line, previous_args)
    703             stop = self.postcmd(stop, line)
    704             if strict:

C:\omero_dist\lib\python\omero\cli.pyc in onecmd(self, line, previous_args)
    769                 self._stack.insert(0, line)
    770                 self.dbg("Stack+: %s" % len(self._stack), level=2)
--> 771                 self.execute(line, previous_args)
    772                 return True
    773             finally:

C:\omero_dist\lib\python\omero\cli.pyc in execute(self, line, previous_args)
    849         try:
    850             if len(debug_opts) == 0:
--> 851                 args.func(args)
    852             elif len(debug_opts) > 1:
    853                 self.die(9, "Conflicting debug options: %s" % ", ".join(
debug_opts))

C:\omero_dist\lib\python\omero\plugins\basics.py in __call__(self, args)
     79         from IPython.Shell import IPShellEmbed
     80         ipshell = IPShellEmbed(args.arg)
---> 81         ipshell(local_ns=ns)
     82
     83

C:\omero_dist\lib\fallback\IPython\Shell.pyc in __call__(self, header, local_ns,
global_ns, dummy)
    240         # Call the embedding code with a stack depth of 1 so it can skip
over
    241         # our call and get the original caller's namespaces.
--> 242         self.IP.embed_mainloop(banner,local_ns,global_ns,stack_depth=1)
    243
    244         if self.exit_msg:

C:\omero_dist\lib\fallback\IPython\iplib.pyc in embed_mainloop(self, header, loc
al_ns, global_ns, stack_depth)
   1834         # make sure the tab-completer has the correct frame information,
so it
   1835         # actually completes using the frame's locals/globals
-> 1836         self.set_completer_frame()
   1837
   1838         # before activating the interactive mode, we need to make sure t
hat

C:\omero_dist\lib\fallback\IPython\iplib.pyc in set_completer_frame(self, frame)

   1265             self.Completer.global_namespace = frame.f_globals
   1266         else:
-> 1267             self.Completer.namespace = self.user_ns
   1268             self.Completer.global_namespace = self.user_global_ns
   1269

AttributeError: 'InteractiveShell' object has no attribute 'Completer'

C:\omero_dist\bin>

[jmoore]

Sorry about the load of output. There seems to also be an issue with IPython (used by bin\omero shell) on Windows.

Would you mind doing the following instead? First, start a console and run:

Code: Select all

bin\setpythonpath.bat
python


Then in the Python console paste:

Code: Select all

import omero
c = omero.client("localhost")
s = c.createSession("root", "ome")
print s.getConfigService().getConfigValue("omero.data.dir")
c.closeSession()
exit()



Thanks,
~Josh.

[ahar]

Hi,
I finally got around to doing this...

Code: Select all

print s.getConfigService().getConfigValue("omero.data.dir")

Returns:
\\\\pelican\\omero_repository\\OMERO

[jmoore]

Thanks for this.

It looks like you've done everything right, but the library we are using for checking disk space fails on the network share. We've add a check which should solve this issue to the upcoming 4.2.1, which we'll be announcing within days.

Cheers,
~Josh.

[ahar]

Hi,
After upgrading to 4.2.1 the server will no longer start with the omero.data.dir specified in UNC format which worked in 4.2.0.

C:\omero_dist\bin>omero admin start
FATAL: OMERO directory does not exist: \\\\pelican\\omero_repository\\OMERO

C:\omero_dist\bin>omero admin diagnostics

================================================================================

OMERO Diagnostics Beta4.2.1-r8614-Beta4.2-b41
================================================================================


Commands: java -version 1.6.0 (C:\Windows\system32\java.E
XE)
Commands: python -V 2.5.5 (C:\Python25\python.EXE)
Commands: icegridnode --version 3.3.1 (C:\Ice-3.3.1\bin\icegridno
de.EXE)
Commands: icegridadmin --version 3.3.1 (C:\Ice-3.3.1\bin\icegridad
min.EXE)
Commands: psql --version not found

Server: icegridnode not started

Log dir: C:\omero_dist\var\log exists

Log files: Blitz-0.log n/a
Log files: DropBox.log n/a
Log files: FileServer.log n/a
Log files: Indexer-0.log n/a
Log files: MonitorServer.log n/a
Log files: OMEROweb.log 1.0 KB errors=1 warnings=0

Log files: Processor-0.log n/a
Log files: Tables-0.log n/a
Log files: TestDropBox.log n/a
Log files: Total size 0.00 MB

Error while parsing logs

Environment:OMERO_HOME=(unset)
Environment:OMERO_NODE=(unset)
Environment:OMERO_MASTER=(unset)
Environment:PATH=C:\Python25\;C:\Windows\system32;C:\Windows;C:\Windows\System32
\Wbem;C:\Ice-3.3.1\bin;C:\Windows\System32\WindowsPowerShell\v1.0\
Environment:ICE_HOME=(unset)
Environment:LD_LIBRARY_PATH=(unset)
Environment:DYLD_LIBRARY_PATH=(unset)

OMERO data dir: '\\\\pelican\\omero_repository\\OMERO' Exists? False Is writa
ble? False
OMERO.web status... [NOT STARTED]

C:\omero_dist\bin>

[jmoore]

Hi Andy,

sorry you're still having problems. Would you mind trying two commands for us? From the console:

Code: Select all

c:\> dir \\pelican\omero_repository\OMERO


and then:

Code: Select all

c:\> python
import os
print os.path.exists("\\\\pelican\\omero_repository\\OMERO")


Our concern is that your current user cannot access the share although the "LocalService" user can.

Cheers,
~Josh