NOTE: I am a biologist, so please forgive my relative computing ignorance...
My OMERO server works fine through Insight. But I have been fighting with my OMERO.web access for a while, in vain. It started when upgrading from 5.0 to 5.1 I think. I just did the last upgrade available, which went fine, but web access is still out.
I followed the instruction on:
https://www.openmicroscopy.org/site/sup ... pache.html
I got stuck with what I am supposed to do with the output of:
$ bin/omero web config apache
Through OMERO.server$ bin/omero admin diagnostics I got:
- Code: Select all
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OMERO Diagnostics 5.2.2-ice35-b17
================================================================================
Commands: java -version 1.8.0 (/usr/bin/java)
Commands: python -V 2.7.11 (/usr/bin/python)
Commands: icegridnode --version 3.5.1 (/usr/bin/icegridnode)
Commands: icegridadmin --version 3.5.1 (/usr/bin/icegridadmin)
Commands: psql --version 9.5.2 (/usr/bin/psql)
Server: icegridnode running
Server: Blitz-0 active (pid = 2360, enabled)
Server: DropBox active (pid = 2402, enabled)
Server: FileServer active (pid = 2410, enabled)
Server: Indexer-0 active (pid = 2411, enabled)
Server: MonitorServer active (pid = 2412, enabled)
Server: OMERO.Glacier2 active (pid = 2427, enabled)
Server: OMERO.IceStorm active (pid = 2445, enabled)
Server: PixelData-0 active (pid = 2414, enabled)
Server: Processor-0 active (pid = 2438, enabled)
Server: Tables-0 active (pid = 2425, enabled)
Server: TestDropBox inactive (enabled)
Log dir: /home/omero/OMERO.server-5.2.2-ice35-b17/var/log exists
Log files: Blitz-0.log 6.0 MB errors=69 warnings=8
Log files: DropBox.log 8.0 KB errors=0 warnings=3
Log files: FileServer.log 1.0 KB
Log files: Indexer-0.log 12.0 KB
Log files: MonitorServer.log 5.0 KB
Log files: OMEROweb.lock 0.0 KB
Log files: OMEROweb.log 5.0 KB errors=0 warnings=18
Log files: OMEROweb_brokenrequest.lock 0.0 KB
Log files: OMEROweb_brokenrequest.log 0.0 KB
Log files: PixelData-0.log 13.0 KB
Log files: Processor-0.log 235.0 KB errors=68 warnings=2
Log files: Tables-0.log 6.0 KB errors=0 warnings=2
Log files: TestDropBox.log n/a
Log files: master.err 4.0 KB errors=0 warnings=8
Log files: master.out 0.0 KB
Log files: Total size 6.95 MB
Environment:OMERO_HOME=(unset)
Environment:OMERO_NODE=(unset)
Environment:OMERO_MASTER=(unset)
Environment:OMERO_USERDIR=(unset)
Environment:OMERO_TMPDIR=(unset)
Environment:PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
Environment:PYTHONPATH=(unset)
Environment:ICE_HOME=(unset)
Environment:LD_LIBRARY_PATH=(unset)
Environment:DYLD_LIBRARY_PATH=(unset)
OMERO SSL port:4064
OMERO TCP port:4063
OMERO data dir:'/OMERO' Exists? True Is writable? True
OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 816)
JVM settings: Blitz-${index} -Xmx5052m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
JVM settings: Indexer-${index} -Xmx3368m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
JVM settings: PixelData-${index} -Xmx5052m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
JVM settings: Repository-${index} -Xmx3368m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
OMERO.web status... You are deploying OMERO.web using apache and mod_wsgi. Cannot check status.
Django version: 1.8.12
Any advice to have the web access restored would be greeeeatly appreciated.
Philippe
