tags: Tuesday
—
2024-01-14
Attending: Will, JM, Dom, Petr, Frances, Chris, Jason, Tom, Khaled, Andreas, Seb, Kyle, Erin, Kevin, Melissa,
Start: 2:00 pm UK
Project Status
(2-3 minutes each)
- IDR Frances:
- Getting up to speed, testing and validation. E.g. OME-Zarr (from .ims conversion) needs to be “series 0” only.
- iviewer PR (deployed on idr-testing) to limit active channels to 10 (according to microservices)
- OMERO
- nightshade upgrade of OMERO.figure and fix user group perms tomorrow 11.00 - 11.45
- OMERO.figure discussion, hopefully next week
- Bio-Formats
- Next release 8.1.0 first week of Feb. Most changes already in.
- Open PRs reviewed
- NGFF
- zarr-python v3.0.0 released :+1:
- Will: updating ome-zarr-py with recent (pre-release) changes in zarr-python. Also waiting on Dask to do the same.
- Will: also been looking at removing ome-zarr-py from napari-ome-zarr.
- Also been testing ngff-zarr for scaling etc.
- RFC 5 under review. Discussion with Josh later on (this week. Notes at https://docs.google.com/document/d/12twRs-ooWBthDHlVagpi8d5gYDKF5mDHAjwlOAj2zxA/edit?tab=t.0
- GerBI (Tom)
- Single authentication - user feature request. Is this supported anywhere?
- Chris: Single-sign-on is supported in OMERO-plus. But it can be tricky. We support about 60% of use-cases. Makes it harder to login via Insight (need to go via web to get tokens etc.). Harder to support than LDAP. No support for groups or roles (no standard here)
- Glencoe
- Chris: need public statement about Spring vulnerability (doesn’t affect our usage)
- Community
- Petr: Annual Karolinska OMERO-fest. OMERO.figure workshop 12th Feb. Zoom. Students already uploading images to our outreach server.
- Prep for Consortium Kick-off Meeting (Jan 27) – Draft Agenda
- Open-source pre-meeting chat tomorrow 10:00.
- Servers for UGM (Yogyakarta) - reviewing specs
- Sad news
AOB
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
Main Topic
(20-25 minutes plus 15 minutes questions max)
