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32 bit tiff files

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32 bit tiff files

Postby robpumphrey » Thu Apr 30, 2015 1:57 pm

As others have noticed, OMERO does not create thumbnails of TIFF files that have pixel type = 32 bit float.

Is handling images of this type on the roadmap?

How are other users handling this type of file? I can imagine preprocessing files before ingesting into OMERO to change the pixel type from 32bit float to 8bit uint, but is that good practice?

Thanks

Rob
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Re: 32 bit tiff files

Postby jburel » Sat May 02, 2015 8:07 pm

Hi Rob
Which version of OMERO are you using?
we have added support for 32-bit and float since version 5.0.7 http://www.openmicroscopy.org/site/supp ... story.html
or are you using file that we failed to render?

Regards

Jmarie
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Re: 32 bit tiff files

Postby robpumphrey » Tue May 19, 2015 9:08 am

We are using 5.0.8.

I will have to do a bit more of an investigation, but the file have now never manages to ingest into the server and a java process java.... -jar lib/server/blitz.jar .. is left consuming 100% CPU.
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Re: 32 bit tiff files

Postby jburel » Wed May 20, 2015 7:43 am

Thanks for the feedback
It looks similar to an issue a local user has recently reported.
We are currently investigating the problem, and we hope to have it fixed in the coming 5.1.2 version

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