Hello,
I'm a new user of ImageJ, and I would like to open ND2 (nikon elements) files with bioformats. My images have 11 z stacks, and three color channels at each stack. Whenever I try to open one with the Bio-Formats importer, it breaks the nd2 file into 11 series each containing 3 planes. This results in opening 11 separate windows for each z plane. In each window, I can scroll through the 3 color channels. I'd much rather have 3 windows open (one for each channel) and have the ability to scroll through the z planes, but I have not figured out a way to do so.
Additionally, I would eventually like to batch convert all of my nd2 files into tiffs. Ideally, I'd like 33 tiffs from each nd2 file (each z plane in all 3 colors). However, when I use ImageJ's built in batch converter with bioformats, I get a single tiff for each nd2 file. These tiff contain only the first z plane of each of the 3 color channels.
Is there a way to get around any of these issues? Any help would be greatly appreciated.
Thanks!
