OK. now I figured out the current OMERO.server 4.1.1. does not support OME-XML Schema version 2009-09.
So I changed the OME-XML info of my files using the 2008-09 version and now successfully imported those images on my OMERO.server.
Thanks.
Then, could you tell me how the server parsed the SA annotation part (another XML format)?
That is, Which tables should I look into in order to access the SA annotation part?
when I look into the "annotation" table from the omero DB after I imported some files,
it looks like below.
Can anyone tell me what does this mean? I don't see any information that I inserted into the SA annotation.
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omero=> select * from annotation;
discriminator | id | description | permissions | ns | version | textvalue | doublevalue | timevalue | boolvalue | longvalue | creation_id | external_id | group_id | owner_id | update_id | file | thumbnail
---------------------+-----+-------------+-------------+-----------------------------------------------+---------+-----------+-------------+-----------+-----------+-----------+-------------+-------------+----------+----------+-----------+------+-----------
/type/OriginalFile/ | 1 | | -103 | openmicroscopy.org/omero/import/companionFile | | | | | | | 368 | | 4 | 2 | 368 | 51 |
/type/OriginalFile/ | 51 | | -103 | openmicroscopy.org/omero/import/companionFile | | | | | | | 25646 | | 4 | 2 | 25646 | 101 |
/type/OriginalFile/ | 101 | | -103 | openmicroscopy.org/omero/import/companionFile | | | | | | | 180736 | | 4 | 2 | 180736 | 151 |
/type/OriginalFile/ | 102 | | -103 | openmicroscopy.org/omero/import/companionFile | | | | | | | 180741 | | 4 | 2 | 180741 | 152 |
(4 rows)
those external info is something like
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<SA:StructuredAnnotations xmlns="http://www.openmicroscopy.org/Schemas/SA/2008-09">
<XmlAnnotation ID="Annotation:001" Namespace="http://omepslid.compbio.cs.cmu.edu/Schemas/PSLID/2010-09">
<Link>LSID:0002</Link>
<Value>
<Dataset>HeLa2D</Dataset>
<Sample><CellType>HeLa</CellType><Target>LAMP2</Target></Sample>
<PSLID><SLIC><Results>NUCLEUS</Results><Features FeatureSetName="SLF10"><Feature Name="Haralick_01">0.5</Feature><Feature Name="Haralick_02">1.5</Feature><Feature Name="Haralick_03">4.5</Feature><Feature Name="Haralick_04">2.5</Feature><Feature Name="Haralick_05">0.0</Feature></Features><Classifier>LIBSVM</Classifier></SLIC></PSLID>
</Value></XmlAnnotation></SA:StructuredAnnotations>
