We're Hiring!

Difference in metadata for LIF files

Historical discussions about the Bio-Formats library. Please look for and ask new questions at https://forum.image.sc/tags/bio-formats
Please note:
Historical discussions about the Bio-Formats library. Please look for and ask new questions at https://forum.image.sc/tags/bio-formats

If you are having trouble with image files, there is information about reporting bugs in the Bio-Formats documentation. Please send us the data and let us know what version of Bio-Formats you are using. For issues with your code, please provide a link to a public repository, ideally GitHub.

Difference in metadata for LIF files

Postby ppouchin » Thu Apr 24, 2014 1:25 pm

Hi,

Using OMERO, I've noticed a difference in the metadata between version 4 and 5 of bio-formats.
I've looked at a given file that was imported in the past and compared it to a re-imported version and I think I only have information for 1 channel. The old metadata is 6 times bigger than the new. Is it expected ?
I'm just asking because I noticed that my old script to restore the colors from the LUT is no longer working: only 1 channel is listed in the metadata, which makes it crash...

I have put a zip online which contains the metadata extracted from OMERO: https://grr.gred-clermont.fr/~pouchinp/LIFMetadata.zip
ppouchin
 
Posts: 98
Joined: Thu Dec 02, 2010 2:08 pm

Re: Difference in metadata for LIF files

Postby rleigh » Sun Apr 27, 2014 9:01 pm

Thanks for reporting this. I've been able to reproduce the problem with our test data and I've opened a ticket for this (https://trac.openmicroscopy.org.uk/ome/ticket/12237).

Kind regards,
Roger Leigh
User avatar
rleigh
 
Posts: 217
Joined: Tue Mar 13, 2012 11:45 am


Return to User Discussion [Legacy]

Who is online

Users browsing this forum: No registered users and 1 guest