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Any idea if OMERO.searcher v1.1.2 with OMERO 5.2.0

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Any idea if OMERO.searcher v1.1.2 with OMERO 5.2.0

Postby rhamedy » Wed Nov 18, 2015 4:33 pm

Hi all,

I wanted to add OMERO.searcher v1.1.2 (recent) service to OEMRO 5.2.0 server but, then I noticed that in README file (downloaded from http://murphylab.web.cmu.edu/software/searcher/) list the following prerequisite:

OMERO PSLID
-----------

Pre-Requisites
--------------
* omero.server 4.3.3 (not tested on other releases)
* omero.web
* libFreeImage
* python v2.5.2 (not tested on other versions)
*list of python packages: numpy, scipy, mahotas, milk, matplotlib and pyslic
* Java v1.6.0_16 (not tested on other versions)
* PBS for submitting feature calculations as jobs to a queue (optional)


We are running OMERO 5.2.0 with Java 1.7.x and wanted to know whether anyone here has used OMERO.searcher v.1.1.2 with configs higher than mentioned in prerequisites?

Regards,
Raf.
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Re: Any idea if OMERO.searcher v1.1.2 with OMERO 5.2.0

Postby manics » Thu Nov 19, 2015 10:43 am

Hi Raf

OMERO.searcher was last tested with early versions of OMERO 5.0. It won't work with 5.0.6 and later due to a CSRF security fix that had to be implemented in OMERO.web.

Apart from that I don't think there are any major API changes that would prevent it from working with OMERO 5.2. If you want to have a go at fixing it have a look at
https://www.openmicroscopy.org/site/sup ... /CSRF.html
and open a pull request against
https://github.com/openmicroscopy/omero_searcher

Simon
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