Visualize the omero raw data

[willy]

Hi OME team,

In our research project, we have implemented the customized visualization tool(WIB) to view the omero data.
It works for most of the data except the unsigned 16 bit images.

Working one:
http://ccdb-portal.crbs.ucsd.edu/WebIma ... raID=34926

Unsigned 16 bit (Not working):
http://ccdb-portal.crbs.ucsd.edu/WebIma ... omeraID=53

In order to display this unsigned 16bit image correctly, we need the information about the data range.
Can you tell us where we can find that information in the database?

Thanks,
Willy

[wmoore]

For a particular channel, you can get the range of pixel intensities using

Code: Select all

Channel.getStatsInfo().getGlobalMin().getValue()
Channel.getStatsInfo().getGlobalMax().getValue()


If you're using the Python Blitz Gateway, you can do

Code: Select all

image = conn.getObject("Image", imageId)
for c in image.getChannels():
   minC = c.getWindowMin()
   maxC = c.getWindowMax()


which calls the same methods as above.

Will.

PS - Nice viewer!