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Fiji (imageJ) and 4.4.1 plugin

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Fiji (imageJ) and 4.4.1 plugin

Postby ScottG » Fri Jul 20, 2012 6:22 pm

Hi,

I have upgraded the sever to 4.4.1 and intalled the 4.4.1 client and all seems to work. However, I also installed the imageJ plugin. I put it in the Fiji plugin folder and restarted Fiji. Open the plugin, login and the insight window comes up and acts fine. However, when I try "view in ImageJ" the LOCI import window comes up but when I hit OK Fiji reports "logging in" then "Populating metadata" and nothing else happens. The image is never imported. I have attached the relevant log bits.

PS. 4.4.1 imageJ client installed in the plugins folder of FIJI and FIji and Loci updated. Running osx 10.7.4 java.version: 1.6.0_33

Thanks in advance
Scott
ScottG
 
Posts: 17
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Re: Fiji (imageJ) and 4.4.1 plugin

Postby ScottG » Fri Jul 20, 2012 6:23 pm

Log_bits.txt.zip
(7.69 KiB) Downloaded 128 times
Sorry here is the log bits
ScottG
 
Posts: 17
Joined: Thu Jun 16, 2011 2:54 pm

Re: Fiji (imageJ) and 4.4.1 plugin

Postby ppouchin » Fri Jul 20, 2012 9:41 pm

I think you don't have the latest loci_tools.jar.
It might not be in the Fiji repository yet...

You can find a link on the downloads page :
http://www.openmicroscopy.org/site/supp ... /downloads

At least, that's how I solved it.
ppouchin
 
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Re: Fiji (imageJ) and 4.4.1 plugin

Postby ScottG » Mon Jul 23, 2012 1:23 pm

Thanks,

That did the trick. Not sure what version i had but its update mechanism must have been pointing to an old version. I tried to updated LOCI through its built-in update menu and it downloaded the trunk and daily builds and installed them but those versions didn't work. But, when i reinstalled LOCI from FIJI the update mechanism is broken so that would have been a clue. The version i downloaded from your link works and updated correctly.

Thanks again,

Scott
ScottG
 
Posts: 17
Joined: Thu Jun 16, 2011 2:54 pm

Re: Fiji (imageJ) and 4.4.1 plugin

Postby pmcarlton » Tue Jul 31, 2012 2:00 am

Thanks, I just had the same issue and the same fix worked.
pmcarlton
 
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