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URGENT: omero web not working

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URGENT: omero web not working

Postby swewa » Mon Apr 08, 2013 5:10 am

Hi

While I was away our omero server was rebooted due to backend storage(NFS) has some problem. I am back to work today and when I checked the server, I noticed web login was not working.
What a welcome back news !
I could see the omero login page, but after I enter my username and password, it took awhile and then brought me to

Code: Select all
Internal Server Error

The server encountered an internal error or misconfiguration and was unable to complete your request.

Please contact the server administrator, root@localhost and inform them of the time the error occurred, and anything you might have done that may have caused the error.

More information about this error may be available in the server error log.


I have stopped omero web, omero and apache service. Archive old log files to clear the old errors, then restarted the services, but the problem still exits.

Here is diagnostics output

Code: Select all
================================================================================
OMERO Diagnostics 4.4.4-ice33-b3099
================================================================================

WARNING:omero.util.UpgradeCheck:UPGRADE AVAILABLE:Please upgrade to 4.4.6 See http://trac.openmicroscopy.org.uk/omero for the latest version

Commands:   java -version                  1.6.0     (/usr/bin/java)
Commands:   python -V                      2.6.5     (/usr/local/bin/python -- 2 others)
Commands:   icegridnode --version          3.3.1     (/opt/Ice-3.3.1/bin/icegridnode)
Commands:   icegridadmin --version         3.3.1     (/opt/Ice-3.3.1/bin/icegridadmin)
Commands:   psql --version                 9.0.3     (/srv/PostgresPlus/9.0SS/bin/psql)

Server:     icegridnode                    running
Server:     Blitz-0                        active (pid = 8240, enabled)
Server:     DropBox                        inactive (disabled)
Server:     FileServer                     active (pid = 8254, enabled)
Server:     Indexer-0                      active (pid = 8256, enabled)
Server:     MonitorServer                  active (pid = 8296, enabled)
Server:     OMERO.Glacier2                 active (pid = 8257, enabled)
Server:     OMERO.IceStorm                 active (pid = 8264, enabled)
Server:     PixelData-0                    active (pid = 8272, enabled)
Server:     Processor-0                    active (pid = 8562, enabled)
Server:     Tables-0                       active (pid = 8561, enabled)
Server:     TestDropBox                    inactive (enabled)

Log dir:    /srv/OMERO.server-4.4.4-ice33-b3099/var/log exists

Log files:  Blitz-0.log                    24.0 KB       errors=3    warnings=10
Log files:  DropBox.log                    3.0 KB        errors=4    warnings=2
Log files:  FileServer.log                 0.0 KB
Log files:  Indexer-0.log                  22.0 KB       errors=0    warnings=1
Log files:  MonitorServer.log              0.0 KB
Log files:  OMEROweb.log                   0.0 KB
Log files:  OMEROweb_request.log           0.0 KB
Log files:  PixelData-0.log                1.0 KB        errors=0    warnings=1
Log files:  Processor-0.log                5.0 KB        errors=1    warnings=7
Log files:  Tables-0.log                   5.0 KB        errors=1    warnings=7
Log files:  TestDropBox.log                n/a
Log files:  master.err                     0.0 KB
Log files:  master.out                     0.0 KB
Log files:  Total size                     321.97 MB

Parsing Blitz-0.log:[line:30] => Server restarted <=

Environment:OMERO_HOME=(unset)
Environment:OMERO_NODE=(unset)
Environment:OMERO_MASTER=(unset)
Environment:PATH=/usr/kerberos/bin:/usr/local/ant/bin:/usr/local/bin:/bin:/usr/bin:/opt/Ice-3.3.1:/opt/Ice-3.3.1/bin:/srv/PostgresPlus/9.0SS/bin:/srv/PostgresPlus/9.0SS/pgbouncer/bin:/srv/PostgresPlus/9.0SS/pgAdmin3/bin
Environment:ICE_HOME=/opt/Ice-3.3.1
Environment:LD_LIBRARY_PATH=/opt/Ice-3.3.1/lib64:/usr/lib64:/srv/PostgresPlus/9.0SS/pgAdmin3/lib:/srv/PostgresPlus/9.0SS/pgAgent/lib:/srv/PostgresPlus/9.0SS/lib:
Environment:DYLD_LIBRARY_PATH=/opt/Ice-3.3.1/lib64:/usr/lib64:

OMERO data dir: '/srv/omerodata/omero.143'   Exists? True   Is writable? True
OMERO.web status... [RUNNING] (PID 8794)


I have attached the necessary log files also.
Your prompt help is greatly appreciated.

thanks and regards,
Attachments
omero.log.tar
(100 KiB) Downloaded 163 times
swewa
 
Posts: 12
Joined: Sun Jan 20, 2013 10:13 pm

Re: URGENT: omero web not working

Postby jmoore » Mon Apr 08, 2013 6:58 am

Sorry to hear your having troubles. Could you also check if there's anything relevant in your Apache log? The OMEROweb.log you sent is very short (2-lines). It would seem that Apache is not yet communicating with OMERO.web. I'm wondering if either: 1) someone else tried to start a OMERO.web process which is blocking the port that you need access to, or 2) someone else tried to run OMERO.web as root which may have inadvertently made a file unreadable / unwritable for Apache.

Cheers,
~Josh
User avatar
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Re: URGENT: omero web not working

Postby swewa » Mon Apr 08, 2013 11:40 pm

HI Josh

Thank you for your reply. This was happened while I was away and I could not determined what was done.

In apache log, there are error like
[Mon Apr 08 14:35:12 2013] [error] [client 130.194.148.153] FastCGI: comm with server "/srv/omeroserver/var/omero.fcgi" aborted: i
dle timeout (30 sec), referer: https://vera143.its.monash.edu.au/omero ... bclient%2F
[Mon Apr 08 14:35:12 2013] [error] [client 130.194.148.153] FastCGI: incomplete headers (0 bytes) received from server "/srv/omero
server/var/omero.fcgi", referer: https://vera143.its.monash.edu.au/omero ... bclient%2F
[Mon Apr 08 14:45:16 2013] [error] [client 130.194.148.153] (111)Connection refused: FastCGI: failed to connect to server "/srv/om
eroserver/var/omero.fcgi": connect() failed
[Mon Apr 08 14:45:16 2013] [error] [client 130.194.148.153] FastCGI: incomplete headers (0 bytes) received from server "/srv/omero
server/var/omero.fcgi"
[Mon Apr 08 14:45:18 2013] [error] [client 130.194.148.153] (111)Connection refused: FastCGI: failed to connect to server "/srv/om
eroserver/var/omero.fcgi": connect() failed
[Mon Apr 08 14:45:18 2013] [error] [client 130.194.148.153] FastCGI: incomplete headers (0 bytes) received from server "/srv/omero
server/var/omero.fcgi"
[Mon Apr 08 14:52:09 2013] [error] [client 130.194.148.153] (111)Connection refused: FastCGI: failed to connect to server "/srv/om
eroserver/var/omero.fcgi": connect() failed
[Mon Apr 08 14:52:09 2013] [error] [client 130.194.148.153] FastCGI: incomplete headers (0 bytes) received from server "/srv/omero
server/var/omero.fcgi"
[Mon Apr 08 14:52:13 2013] [error] [client 130.194.148.153] (111)Connection refused: FastCGI: failed to connect to server "/srv/om
eroserver/var/omero.fcgi": connect() failed
[Mon Apr 08 14:52:13 2013] [error] [client 130.194.148.153] FastCGI: incomplete headers (0 bytes) received from server "/srv/omero
server/var/omero.fcgi"
[Mon Apr 08 15:07:43 2013] [error] [client 130.194.148.153] FastCGI: comm with server "/srv/omeroserver/var/omero.fcgi" aborted: i
dle timeout (30 sec), referer: https://vera143.its.monash.edu.au/omero ... bclient%2F
[Mon Apr 08 15:07:43 2013] [error] [client 130.194.148.153] FastCGI: incomplete headers (0 bytes) received from server "/srv/omero
server/var/omero.fcgi", referer: https://vera143.its.monash.edu.au/omero ... bclient%2F
[Mon Apr 08 15:19:49 2013] [error] [client 130.194.148.153] FastCGI: comm with server "/srv/omeroserver/var/omero.fcgi" aborted: i
dle timeout (30 sec), referer: https://vera143.its.monash.edu.au/omero ... bclient%2F
[Mon Apr 08 15:19:49 2013] [error] [client 130.194.148.153] FastCGI: incomplete headers (0 bytes) received from server "/srv/omero
server/var/omero.fcgi", referer: https://vera143.its.monash.edu.au/omero ... bclient%2F


The OMEROweb.log I sent you was after I archived the old one. That was the reason it did not contain any infomation much. Here is the old OMEROweb.log that I extracted from archive.

Code: Select all
2013-04-08 05:03:04,554  INFO [                omeroweb.webclient.views] (proc.04125) <module>:110 INIT '4125'
2013-04-08 05:04:12,892  INFO [                           omero.gateway] (proc.04125) connect:1735 created connection (uuid=f685af2a-552c-452a-a205-842050096695)
2013-04-08 05:05:00,534  INFO [                           omero.gateway] (proc.04125) connect:1735 created connection (uuid=e04a18f1-3b61-4352-b2db-94d29f0cb25e)
2013-04-08 05:05:27,409 ERROR [                 omeroweb.feedback.views] (proc.04125) handler500:140 handler500: Server error
2013-04-08 05:05:27,409 ERROR [                 omeroweb.feedback.views] (proc.04125) handler500:142 Traceback (most recent call last):

  File "/srv/omeroserver/lib/python/django/core/handlers/base.py", line 111, in get_response
    response = callback(request, *callback_args, **callback_kwargs)

  File "/srv/omeroserver/lib/python/omeroweb/webclient/views.py", line 150, in login
    upgradeCheck()

  File "/srv/omeroserver/lib/python/omeroweb/webadmin/webadmin_utils.py", line 25, in upgradeCheck
    check.run()

  File "/srv/omeroserver/lib/python/omero/util/upgrade_check.py", line 119, in run
    response = urllib2.urlopen(request)

  File "/usr/lib64/python2.6/urllib2.py", line 126, in urlopen
    return _opener.open(url, data, timeout)

  File "/usr/lib64/python2.6/urllib2.py", line 391, in open
    response = self._open(req, data)

  File "/usr/lib64/python2.6/urllib2.py", line 409, in _open
    '_open', req)

  File "/usr/lib64/python2.6/urllib2.py", line 369, in _call_chain
    result = func(*args)

  File "/usr/lib64/python2.6/urllib2.py", line 1161, in http_open
    return self.do_open(httplib.HTTPConnection, req)

  File "/usr/lib64/python2.6/urllib2.py", line 1134, in do_open
    r = h.getresponse()

  File "/usr/lib64/python2.6/httplib.py", line 986, in getresponse
    response.begin()

  File "/usr/lib64/python2.6/httplib.py", line 391, in begin
    version, status, reason = self._read_status()

  File "/usr/lib64/python2.6/httplib.py", line 349, in _read_status
    line = self.fp.readline()

  File "/usr/lib64/python2.6/socket.py", line 397, in readline
    data = recv(1)

KeyboardInterrupt

2013-04-08 05:08:44,381  INFO [                omeroweb.webclient.views] (proc.05334) <module>:110 INIT '5334'
2013-04-08 05:09:19,880  INFO [                           omero.gateway] (proc.05334) connect:1735 created connection (uuid=234f86c0-658b-4a70-be27-61ca3f076500)
2013-04-08 05:10:15,056  INFO [                           omero.gateway] (proc.05334) connect:1735 created connection (uuid=75a47a01-0378-4838-b9a1-e8a1d59d0507)
2013-04-08 05:10:48,100  INFO [                 omero.util.UpgradeCheck] (proc.05334) run:130 no update needed
2013-04-08 05:20:10,407  INFO [                omeroweb.webclient.views] (proc.05331) <module>:110 INIT '5331'
2013-04-08 05:20:38,448  INFO [                           omero.gateway] (proc.05331) connect:1735 created connection (uuid=71b7e446-a39b-4b36-ba68-9c2152b3bce6)
2013-04-08 05:21:12,802  INFO [                           omero.gateway] (proc.05331) connect:1727 Failed to create session.
2013-04-08 05:22:13,260  INFO [                           omero.gateway] (proc.05331) connect:1735 created connection (uuid=7196d5f8-f515-43db-b6e9-2645e22637d4)
2013-04-08 05:22:57,609  INFO [                           omero.gateway] (proc.05331) connect:1735 created connection (uuid=368953d1-70d9-45d7-908c-029c08a67ef2)
2013-04-08 05:34:32,145  INFO [                omeroweb.webclient.views] (proc.07206) <module>:110 INIT '7206'
2013-04-08 05:34:53,261  INFO [                           omero.gateway] (proc.07206) connect:1735 created connection (uuid=15599172-8551-4632-9afd-0378d48b1913)
2013-04-08 05:35:24,188  INFO [                           omero.gateway] (proc.07206) connect:1735 created connection (uuid=bbc1ace8-5954-46e8-b0f2-33e28ac245fa)
2013-04-08 05:35:35,437  INFO [                 omero.util.UpgradeCheck] (proc.07206) run:130 no update needed

It was happened when our NFS share server was down. So the omero server was hard reset. I supposed the problem was happned when the server came online. Omero Insight client access is still fine though.
swewa
 
Posts: 12
Joined: Sun Jan 20, 2013 10:13 pm

Re: URGENT: omero web not working

Postby swewa » Mon Apr 08, 2013 11:50 pm

Additional information regarding server setup

Omero server is running on VM, redhat linux
Omero data directory is on NFS mounted volumne
Database is on another postgres server.
User authentication is configured for LDAP.

thanks.
swewa
 
Posts: 12
Joined: Sun Jan 20, 2013 10:13 pm

Re: URGENT: omero web not working

Postby swewa » Tue Apr 09, 2013 12:24 am

I noticed that if I refresh the Internal Server Error Page, it brought me to user home page(after login)

Do you have any idea what cause this?
swewa
 
Posts: 12
Joined: Sun Jan 20, 2013 10:13 pm

Re: URGENT: omero web not working

Postby atarkowska » Tue Apr 09, 2013 7:57 am

Hi,

Apparently the omero.fcgi file was not being automatically created when omero uses fcgi startup script to start the site. So you can try to check permission on /srv/omeroserver/var and make sure apache has access to create omero.fcgi. You can also go into the directory and create a file via
Code: Select all
touch omero.fcgi

then change ownership via
Code: Select all
chown lighttd:lightd omero.fcgi

I hope it will help.

Thanks
Ola
atarkowska
 
Posts: 327
Joined: Mon May 18, 2009 12:44 pm

Re: URGENT: omero web not working

Postby atarkowska » Tue Apr 09, 2013 8:00 am

swewa wrote:I noticed that if I refresh the Internal Server Error Page, it brought me to user home page(after login)

Do you have any idea what cause this?


That sounds strange. Could you please clean web browser cache?

Thanks
Ola
atarkowska
 
Posts: 327
Joined: Mon May 18, 2009 12:44 pm

Re: URGENT: omero web not working

Postby swewa » Wed Apr 10, 2013 12:02 am

Hi Ola

Thank you the advice.
/srv/omeroserver/var is owned by omero user and httpd server is run by apache user. apache user will not be able to create omero.fcgi folder there, unless i change the permission of the folder to 777.
I have followed your workaround and created omero.cfgi owned by apache.apache and that stop the fcgi error message in apache log and internal server issue.
But to be frank, I am still worried of any other problem.


atarkowska wrote:Hi,

Apparently the omero.fcgi file was not being automatically created when omero uses fcgi startup script to start the site. So you can try to check permission on /srv/omeroserver/var and make sure apache has access to create omero.fcgi. You can also go into the directory and create a file via
Code: Select all
touch omero.fcgi

then change ownership via
Code: Select all
chown lighttd:lightd omero.fcgi

I hope it will help.

Thanks
Ola
swewa
 
Posts: 12
Joined: Sun Jan 20, 2013 10:13 pm

Re: URGENT: omero web not working

Postby swewa » Wed Apr 10, 2013 2:19 am

I had proceeded this workaround to production server and strangely.. the production server still have 500 Internal Server Error.

In apache log, there is still
Code: Select all
[Wed Apr 10 12:12:03 2013] [error] [client 130.194.148.153] FastCGI: comm with server "/srv/omeroserver/var/omero.fcgi" aborted: idle timeout (30 sec), referer: https://omero.its.monash.edu.au/omero/webclient/login/?url=%2Fomero%2Fwebclient%2F
[Wed Apr 10 12:12:03 2013] [error] [client 130.194.148.153] FastCGI: incomplete headers (0 bytes) received from server "/srv/omeroserver/var/omero.fcgi", referer: https://omero.its.monash.edu.au/omero/webclient/login/?url=%2Fomero%2Fwebclient%2F


Here is /srv/omeroserver permission issues.
Code: Select all
[root@vera145 omeroserver]# pwd
/srv/omeroserver
[root@vera145 omeroserver]# ls -l
total 52
drwxr-xr-x 2 omero omero  4096 Sep 25  2012 bin
drwxr-xr-x 4 omero omero  4096 Sep 25  2012 etc
drwxr-xr-x 3 omero omero  4096 Sep 25  2012 include
drwxr-xr-x 9 omero omero  4096 Sep 25  2012 lib
drwxr-xr-x 2 omero omero  4096 Sep 25  2012 licenses
-rw-r--r-- 1 omero omero 17987 Sep 25  2012 LICENSE.txt
drwx------ 3 omero omero  4096 Feb  1 09:31 omero
drwxr-xr-x 4 omero omero  4096 Sep 25  2012 sql
drwxrwxr-x 6 omero omero  4096 Apr 10 12:06 var
[root@vera145 omeroserver]# ls -l var/
total 20
-rw-r--r-- 1 omero  omero     5 Apr 10 12:06 django.pid
drwxrwxr-x 2 omero  omero  4096 Feb 19 14:08 log
drwxrwxr-x 5 omero  omero  4096 Feb  1 09:31 master
-rw-r--r-- 1 apache apache    0 Apr 10 12:04 omero.fcgi
drwxrwxr-x 2 omero  omero  4096 Feb  1 09:31 registry
drwxr-xr-x 5 omero  omero  4096 Feb  1 09:54 weblitz_cache
swewa
 
Posts: 12
Joined: Sun Jan 20, 2013 10:13 pm

Re: URGENT: omero web not working

Postby swewa » Wed Apr 10, 2013 2:44 am

Sorry to bombard with many posts.

I notice the following error in master.err (date 4/10/13)

Code: Select all
[root@vera145 log]# more master.err
Exception in thread "pool-2-thread-5" java.lang.OutOfMemoryError: GC overhead limit exceeded
3/18/13 15:31:38:250 warning: Blitz-0-Ice.ThreadPool.Server-17: dispatch exception:
identity: 9d54b9e9-017f-44ab-a101-fffcda429668/82:c2:f5:be:2f3d7299:13c92d0ca02:-7130omero.api.Exporter
facet:
operation: addImage
ome.conditions.InternalException: Doing 2 things at once
   at ome.services.blitz.impl.ExporterI$State.check(ExporterI.java:112)
   at ome.services.blitz.impl.ExporterI.addImage_async(ExporterI.java:173)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
   at omero.cmd.CallContext.invoke(CallContext.java:59)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
   at $Proxy122.addImage_async(Unknown Source)
   at omero.api._ExporterTie.addImage_async(_ExporterTie.java:64)
   at omero.api._ExporterDisp.___addImage(_ExporterDisp.java:141)
   at omero.api._ExporterDisp.__dispatch(_ExporterDisp.java:240)
   at IceInternal.Incoming.invoke(Incoming.java:159)
   at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
   at Ice.ConnectionI.message(ConnectionI.java:972)
   at IceInternal.ThreadPool.run(ThreadPool.java:577)
   at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
   at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

3/18/13 15:31:38:203 warning: Blitz-0-Ice.ThreadPool.Server-14: dispatch exception:
identity: 9d54b9e9-017f-44ab-a101-fffcda429668/82:c2:f5:be:2f3d7299:13c92d0ca02:-7130omero.api.Exporter
facet:
operation: addImage
ome.conditions.InternalException: Doing 2 things at once
   at ome.services.blitz.impl.ExporterI$State.check(ExporterI.java:112)
   at ome.services.blitz.impl.ExporterI.addImage_async(ExporterI.java:173)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
   at omero.cmd.CallContext.invoke(CallContext.java:59)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
   at $Proxy122.addImage_async(Unknown Source)
   at omero.api._ExporterTie.addImage_async(_ExporterTie.java:64)
   at omero.api._ExporterDisp.___addImage(_ExporterDisp.java:141)
   at omero.api._ExporterDisp.__dispatch(_ExporterDisp.java:240)
   at IceInternal.Incoming.invoke(Incoming.java:159)
   at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
   at Ice.ConnectionI.message(ConnectionI.java:972)
   at IceInternal.ThreadPool.run(ThreadPool.java:577)
   at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
   at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

3/18/13 15:31:38:226 warning: Blitz-0-Ice.ThreadPool.Server-13: dispatch exception:
identity: 9d54b9e9-017f-44ab-a101-fffcda429668/82:c2:f5:be:2f3d7299:13c92d0ca02:-7130omero.api.Exporter
facet:
operation: addImage
ome.conditions.InternalException: Doing 2 things at once
   at ome.services.blitz.impl.ExporterI$State.check(ExporterI.java:112)
   at ome.services.blitz.impl.ExporterI.addImage_async(ExporterI.java:173)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
   at omero.cmd.CallContext.invoke(CallContext.java:59)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
   at $Proxy122.addImage_async(Unknown Source)
   at omero.api._ExporterTie.addImage_async(_ExporterTie.java:64)
   at omero.api._ExporterDisp.___addImage(_ExporterDisp.java:141)
   at omero.api._ExporterDisp.__dispatch(_ExporterDisp.java:240)
   at IceInternal.Incoming.invoke(Incoming.java:159)
   at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
   at Ice.ConnectionI.message(ConnectionI.java:972)
   at IceInternal.ThreadPool.run(ThreadPool.java:577)
   at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
   at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

03/18/13 15:31:38.397 OMERO.Glacier2: warning: dispatch exception: OutgoingAsync.cpp:352: Ice::UnknownException:
unknown exception:
ome.conditions.InternalException: Doing 2 things at once
   at ome.services.blitz.impl.ExporterI$State.check(ExporterI.java:112)
   at ome.services.blitz.impl.ExporterI.addImage_async(ExporterI.java:173)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
   at omero.cmd.CallContext.invoke(CallContext.java:59)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
   at $Proxy122.addImage_async(Unknown Source)
   at omero.api._ExporterTie.addImage_async(_ExporterTie.java:64)
   at omero.api._ExporterDisp.___addImage(_ExporterDisp.java:141)
   at omero.api._ExporterDisp.__dispatch(_ExporterDisp.java:240)
   at IceInternal.Incoming.invoke(Incoming.java:159)
   at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
   at Ice.ConnectionI.message(ConnectionI.java:972)
   at IceInternal.ThreadPool.run(ThreadPool.java:577)
   at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
   at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

identity: 9d54b9e9-017f-44ab-a101-fffcda429668/82:c2:f5:be:2f3d7299:13c92d0ca02:-7130omero.api.Exporter
facet:
operation: addImage
03/18/13 15:31:38.398 OMERO.Glacier2: warning: dispatch exception: OutgoingAsync.cpp:352: Ice::UnknownException:
unknown exception:
ome.conditions.InternalException: Doing 2 things at once
   at ome.services.blitz.impl.ExporterI$State.check(ExporterI.java:112)
   at ome.services.blitz.impl.ExporterI.addImage_async(ExporterI.java:173)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
   at omero.cmd.CallContext.invoke(CallContext.java:59)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
   at $Proxy122.addImage_async(Unknown Source)
   at omero.api._ExporterTie.addImage_async(_ExporterTie.java:64)
   at omero.api._ExporterDisp.___addImage(_ExporterDisp.java:141)
   at omero.api._ExporterDisp.__dispatch(_ExporterDisp.java:240)
   at IceInternal.Incoming.invoke(Incoming.java:159)
   at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
   at Ice.ConnectionI.message(ConnectionI.java:972)
   at IceInternal.ThreadPool.run(ThreadPool.java:577)
   at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
   at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

identity: 9d54b9e9-017f-44ab-a101-fffcda429668/82:c2:f5:be:2f3d7299:13c92d0ca02:-7130omero.api.Exporter
facet:
operation: addImage
03/18/13 15:31:38.398 OMERO.Glacier2: warning: dispatch exception: OutgoingAsync.cpp:352: Ice::UnknownException:
unknown exception:
ome.conditions.InternalException: Doing 2 things at once
   at ome.services.blitz.impl.ExporterI$State.check(ExporterI.java:112)
   at ome.services.blitz.impl.ExporterI.addImage_async(ExporterI.java:173)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
   at omero.cmd.CallContext.invoke(CallContext.java:59)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
   at $Proxy122.addImage_async(Unknown Source)
   at omero.api._ExporterTie.addImage_async(_ExporterTie.java:64)
   at omero.api._ExporterDisp.___addImage(_ExporterDisp.java:141)
   at omero.api._ExporterDisp.__dispatch(_ExporterDisp.java:240)
   at IceInternal.Incoming.invoke(Incoming.java:159)
   at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
   at Ice.ConnectionI.message(ConnectionI.java:972)
   at IceInternal.ThreadPool.run(ThreadPool.java:577)
   at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
   at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

identity: 9d54b9e9-017f-44ab-a101-fffcda429668/82:c2:f5:be:2f3d7299:13c92d0ca02:-7130omero.api.Exporter
facet:
operation: addImage
04/03/13 11:53:10.112 OMERO.Glacier2: warning: unable to contact permissions verifier `BlitzVerifier@BlitzAdapters'
Reference.cpp:1546: Ice::NoEndpointException:
no suitable endpoint available for proxy `BlitzVerifier -t @ BlitzAdapters'
04/03/13 11:53:10.154 OMERO.Glacier2: warning: unable to contact session manager `BlitzManager@BlitzAdapters'
Reference.cpp:1546: Ice::NoEndpointException:
no suitable endpoint available for proxy `BlitzManager -t @ BlitzAdapters'
4/8/13 13:57:19:387 warning: Blitz-0-Ice.ThreadPool.Server-9: dispatch exception:
identity: session-09927619-5cbd-42c7-8ac1-78d7c811e829/5d33e17d-0e11-4d95-8baa-38d35a59501e
facet:
operation: destroy
Ice.ObjectAdapterDeactivatedException
    name = "BlitzAdapter"
   at Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1028)
   at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:459)
   at Ice.ObjectAdapterI.find(ObjectAdapterI.java:453)
   at omero.cmd.SessionI.unregisterServant(SessionI.java:616)
   at omero.cmd.SessionI.cleanServants(SessionI.java:454)
   at omero.cmd.SessionI.cleanServants(SessionI.java:379)
   at omero.cmd.SessionI.cleanupSelf(SessionI.java:345)
   at omero.cmd.SessionI.destroy(SessionI.java:309)
   at omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:63)
   at Glacier2._SessionDisp.___destroy(_SessionDisp.java:82)
   at omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1271)
   at IceInternal.Incoming.invoke(Incoming.java:159)
   at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
   at Ice.ConnectionI.message(ConnectionI.java:972)
   at IceInternal.ThreadPool.run(ThreadPool.java:577)
   at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
   at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

4/8/13 13:57:19:392 warning: Blitz-0-Ice.ThreadPool.Server-9: dispatch exception:
identity: session-5a183f08-0ded-4f2c-9b9e-f96de9ca0633/5d33e17d-0e11-4d95-8baa-38d35a59501e
facet:
operation: destroy
Ice.ObjectAdapterDeactivatedException
    name = "BlitzAdapter"
   at Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1028)
   at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:459)
   at Ice.ObjectAdapterI.find(ObjectAdapterI.java:453)
   at omero.cmd.SessionI.unregisterServant(SessionI.java:616)
   at omero.cmd.SessionI.cleanServants(SessionI.java:454)
   at omero.cmd.SessionI.cleanServants(SessionI.java:379)
   at omero.cmd.SessionI.doDestroy(SessionI.java:369)
   at omero.cmd.SessionI.destroy(SessionI.java:297)
   at omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:63)
   at Glacier2._SessionDisp.___destroy(_SessionDisp.java:82)
   at omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1271)
   at IceInternal.Incoming.invoke(Incoming.java:159)
   at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
   at Ice.ConnectionI.message(ConnectionI.java:972)
   at IceInternal.ThreadPool.run(ThreadPool.java:577)
   at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
   at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

4/8/13 13:57:19:395 warning: Blitz-0-Ice.ThreadPool.Server-1: dispatch exception:
identity: session-ab9b129f-b6cf-4ee2-9ae0-9f36b50f6d0b/a4c6b4df-6314-4158-9b61-b91f00b26e8d
facet:
operation: destroy
Ice.ObjectAdapterDeactivatedException
    name = "BlitzAdapter"
   at Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1028)
   at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:459)
   at Ice.ObjectAdapterI.find(ObjectAdapterI.java:453)
   at omero.cmd.SessionI.unregisterServant(SessionI.java:616)
   at omero.cmd.SessionI.cleanServants(SessionI.java:454)
   at omero.cmd.SessionI.cleanServants(SessionI.java:379)
   at omero.cmd.SessionI.cleanupSelf(SessionI.java:345)
   at omero.cmd.SessionI.destroy(SessionI.java:309)
   at omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:63)
   at Glacier2._SessionDisp.___destroy(_SessionDisp.java:82)
   at omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1271)
   at IceInternal.Incoming.invoke(Incoming.java:159)
   at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
   at Ice.ConnectionI.message(ConnectionI.java:972)
   at IceInternal.ThreadPool.run(ThreadPool.java:577)
   at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
   at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

04/08/13 13:59:21.838 OMERO.Glacier2: warning: unable to contact permissions verifier `BlitzVerifier@BlitzAdapters'
Reference.cpp:1546: Ice::NoEndpointException:
no suitable endpoint available for proxy `BlitzVerifier -t @ BlitzAdapters'
04/08/13 13:59:21.842 OMERO.Glacier2: warning: unable to contact session manager `BlitzManager@BlitzAdapters'
Reference.cpp:1546: Ice::NoEndpointException:
no suitable endpoint available for proxy `BlitzManager -t @ BlitzAdapters'
4/9/13 11:39:17:407 warning: Blitz-0-Ice.ThreadPool.Server-0: dispatch exception:
identity: session-fb6ae385-faf5-4948-9a8c-58315b1ca1a5/283f16be-9934-49a0-8927-9061c45ecc4f
facet:
operation: destroy
Ice.ObjectAdapterDeactivatedException
    name = "BlitzAdapter"
   at Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1028)
   at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:459)
   at Ice.ObjectAdapterI.find(ObjectAdapterI.java:453)
   at omero.cmd.SessionI.unregisterServant(SessionI.java:616)
   at omero.cmd.SessionI.cleanServants(SessionI.java:454)
   at omero.cmd.SessionI.cleanServants(SessionI.java:379)
   at omero.cmd.SessionI.cleanupSelf(SessionI.java:345)
   at omero.cmd.SessionI.destroy(SessionI.java:309)
   at omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:63)
   at Glacier2._SessionDisp.___destroy(_SessionDisp.java:82)
   at omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1271)
   at IceInternal.Incoming.invoke(Incoming.java:159)
   at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
   at Ice.ConnectionI.message(ConnectionI.java:972)
   at IceInternal.ThreadPool.run(ThreadPool.java:577)
   at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
   at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

4/9/13 11:39:17:410 warning: Blitz-0-Ice.ThreadPool.Server-4: dispatch exception:
identity: session-ea96cde1-6ec2-4f9c-a45c-c2ced2085e89/08a4dd84-012d-4fff-a184-9281c307ec24
facet:
operation: destroy
Ice.ObjectAdapterDeactivatedException
    name = "BlitzAdapter"
   at Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1028)
   at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:459)
   at Ice.ObjectAdapterI.find(ObjectAdapterI.java:453)
   at omero.cmd.SessionI.unregisterServant(SessionI.java:616)
   at omero.cmd.SessionI.cleanServants(SessionI.java:454)
   at omero.cmd.SessionI.cleanServants(SessionI.java:379)
   at omero.cmd.SessionI.doDestroy(SessionI.java:369)
   at omero.cmd.SessionI.destroy(SessionI.java:297)
   at omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:63)
   at Glacier2._SessionDisp.___destroy(_SessionDisp.java:82)
   at omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1271)
   at IceInternal.Incoming.invoke(Incoming.java:159)
   at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
   at Ice.ConnectionI.message(ConnectionI.java:972)
   at IceInternal.ThreadPool.run(ThreadPool.java:577)
   at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
   at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

4/9/13 11:39:17:413 warning: Blitz-0-Ice.ThreadPool.Server-1: dispatch exception:
identity: session-fce14b64-2af9-44e2-8c20-ef1870adabcc/3a623d13-b3d1-4132-bd35-b3dce61f6996
facet:
operation: destroy
Ice.ObjectAdapterDeactivatedException
    name = "BlitzAdapter"
   at Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1028)
   at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:459)
   at Ice.ObjectAdapterI.find(ObjectAdapterI.java:453)
   at omero.cmd.SessionI.unregisterServant(SessionI.java:616)
   at omero.cmd.SessionI.cleanServants(SessionI.java:454)
   at omero.cmd.SessionI.cleanServants(SessionI.java:379)
   at omero.cmd.SessionI.cleanupSelf(SessionI.java:345)
   at omero.cmd.SessionI.destroy(SessionI.java:309)
   at omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:63)
   at Glacier2._SessionDisp.___destroy(_SessionDisp.java:82)
   at omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1271)
   at IceInternal.Incoming.invoke(Incoming.java:159)
   at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
   at Ice.ConnectionI.message(ConnectionI.java:972)
   at IceInternal.ThreadPool.run(ThreadPool.java:577)
   at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
   at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

4/9/13 11:39:17:415 warning: Blitz-0-Ice.ThreadPool.Server-6: dispatch exception:
identity: session-42554309-7212-44db-9acc-f36ebc752b5b/b9d42a9f-a6f6-4a89-aff3-c25a2b58d75e
facet:
operation: destroy
Ice.ObjectAdapterDeactivatedException
    name = "BlitzAdapter"
   at Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1028)
   at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:459)
   at Ice.ObjectAdapterI.find(ObjectAdapterI.java:453)
   at omero.cmd.SessionI.unregisterServant(SessionI.java:616)
   at omero.cmd.SessionI.cleanServants(SessionI.java:454)
   at omero.cmd.SessionI.cleanServants(SessionI.java:379)
   at omero.cmd.SessionI.cleanupSelf(SessionI.java:345)
   at omero.cmd.SessionI.destroy(SessionI.java:309)
   at omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:63)
   at Glacier2._SessionDisp.___destroy(_SessionDisp.java:82)
   at omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1271)
   at IceInternal.Incoming.invoke(Incoming.java:159)
   at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
   at Ice.ConnectionI.message(ConnectionI.java:972)
   at IceInternal.ThreadPool.run(ThreadPool.java:577)
   at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
   at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

4/9/13 11:39:17:420 warning: Blitz-0-Ice.ThreadPool.Server-3: dispatch exception:
identity: session-ec52b0be-c6b0-4a96-a5c3-cf26a2b28b7d/b9d42a9f-a6f6-4a89-aff3-c25a2b58d75e
facet:
operation: destroy
Ice.ObjectAdapterDeactivatedException
    name = "BlitzAdapter"
   at Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1028)
   at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:459)
   at Ice.ObjectAdapterI.find(ObjectAdapterI.java:453)
   at omero.cmd.SessionI.unregisterServant(SessionI.java:616)
   at omero.cmd.SessionI.cleanServants(SessionI.java:454)
   at omero.cmd.SessionI.cleanServants(SessionI.java:379)
   at omero.cmd.SessionI.cleanupSelf(SessionI.java:345)
   at omero.cmd.SessionI.destroy(SessionI.java:309)
   at omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:63)
   at Glacier2._SessionDisp.___destroy(_SessionDisp.java:82)
   at omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1271)
   at IceInternal.Incoming.invoke(Incoming.java:159)
   at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
   at Ice.ConnectionI.message(ConnectionI.java:972)
   at IceInternal.ThreadPool.run(ThreadPool.java:577)
   at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
   at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

4/10/13 12:03:46:210 warning: Blitz-0-Ice.ThreadPool.Server-9: dispatch exception:
identity: session-7ccd24d4-3b48-4c09-9ef2-70eb16aa9522/edbcce7b-e73f-4922-a8d2-146722c67c66
facet:
operation: destroy
Ice.ObjectAdapterDeactivatedException
    name = "BlitzAdapter"
   at Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1028)
   at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:459)
   at Ice.ObjectAdapterI.find(ObjectAdapterI.java:453)
   at omero.cmd.SessionI.unregisterServant(SessionI.java:616)
   at omero.cmd.SessionI.cleanServants(SessionI.java:454)
   at omero.cmd.SessionI.cleanServants(SessionI.java:379)
   at omero.cmd.SessionI.doDestroy(SessionI.java:369)
   at omero.cmd.SessionI.destroy(SessionI.java:297)
   at omero.api._ServiceFactoryTie.destroy(_ServiceFactoryTie.java:63)
   at Glacier2._SessionDisp.___destroy(_SessionDisp.java:82)
   at omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1271)
   at IceInternal.Incoming.invoke(Incoming.java:159)
   at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
   at Ice.ConnectionI.message(ConnectionI.java:972)
   at IceInternal.ThreadPool.run(ThreadPool.java:577)
   at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
   at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

swewa
 
Posts: 12
Joined: Sun Jan 20, 2013 10:13 pm

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