I installed Bioformats and ITK following the description given in the page http://loci.wisc.edu/bio-formats/itk
(with the difference that the compiler used was /usr/bin/llvm-g++ in order to have python support with itk)
I am trying to read ZVI files in ITK. These files can be loaded in Fiji using the LOCI plugin.
Unfortunately when I try to execute a simple ImageReadWrite on one of these images, bioformats reading gets stuck forever there :
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Debug: In /Users/thomas_deschamps/Dev/bioformats/components/native/bf-itk/itkBioFormatsImageIO.cxx, line 675
BioFormatsImageIO (0x1028faf00): BioFormatsImageIO::Read command: read /Data/myfile.zvi 0 1388 0 1040 0 1 0 1 0 1
The stack with gdb leads to
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(gdb) backtrace
#0 0x00007fff87e0edf2 in select$DARWIN_EXTSN ()
#1 0x000000010005264a in itksysProcess_WaitForData ()
#2 0x0000000101ba1fb8 in itk::BioFormatsImageIO::Read ()
#3 0x000000010001f08f in itk::ImageFileReader<itk::Image<short, 2u>, itk::DefaultConvertPixelTraits<short> >::GenerateData ()
#4 0x0000000100641186 in itk::ProcessObject::UpdateOutputData ()
#5 0x0000000100020b63 in itk::ImageFileWriter<itk::Image<short, 2u> >::Write ()
#6 0x0000000100015736 in main ()
So if anybody has an idea or a suggestion, it's very welcome.
BTW if you know how to remove all the bioformat debug info, that's good too.
Thanks